View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_256 (Length: 246)
Name: NF10049A_low_256
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_256 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 32189637 - 32189454
Alignment:
| Q |
1 |
taatgacataaaatctattcaatatatatcacaaattgaagagagnnnnnnntcacataatcaatgctcgtgatccatttgtaaattttcatatgttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32189637 |
taatgacataaaatctattcaatatatatcacaaattgaagaga--aaaaaatcacataatcaatgctcttgatccatttgtaaattttcatatgttgtt |
32189540 |
T |
|
| Q |
101 |
attattttgatttctatctcatgaataataaattagggcaaacaggaaagaagacttacgataagattcacgaatagatgattcca |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32189539 |
attattttgatttctatctcatgaataataaattagggcaaacaggaaagaagacttacgataagattcacgaatagatgattcca |
32189454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 32189427 - 32189380
Alignment:
| Q |
184 |
ccatcagaattcaaattttaaaagctaattaagtggttgatcttgcaa |
231 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32189427 |
ccatcggaattcaaattttaaaagctaattaagtggttgatcttgcaa |
32189380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 32231955 - 32232066
Alignment:
| Q |
53 |
tcacataatcaatgctcgtgatccatttgtaaattttcatatgttgttattattttgatttctatctcatgaataataaattagggcaaacaggaaagaa |
152 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||| ||||||| ||| || || || ||||| | || |||| |
|
|
| T |
32231955 |
tcacataatcaatgcttgcaatccatttgtaa-ttttcatatgttattattattttgatttacttctcatgcatactagatcagagcaaagaagagagaa |
32232053 |
T |
|
| Q |
153 |
gacttacgataag |
165 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
32232054 |
gacttacaataag |
32232066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 8855119 - 8855208
Alignment:
| Q |
73 |
atccatttgtaaattttcatatgttgttattattttgatttctatctcatgaataataaattagggcaaacaggaaagaagacttacgataag |
165 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| |||||| |||||||| ||||||||| | || ||||||||||||||||| |
|
|
| T |
8855119 |
atccatttgtagtttttcatatgtt---attattttgatttcttcctcatgcataataaactagggcaaagaagatagaagacttacgataag |
8855208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University