View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_258 (Length: 246)

Name: NF10049A_low_258
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_258
NF10049A_low_258
[»] chr2 (7 HSPs)
chr2 (20-237)||(11118993-11119210)
chr2 (20-237)||(11111222-11111439)
chr2 (20-240)||(10793352-10793572)
chr2 (133-235)||(11149919-11150021)
chr2 (133-235)||(11156587-11156689)
chr2 (133-222)||(11137645-11137734)
chr2 (140-235)||(11145957-11146052)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 11118993 - 11119210
Alignment:
Q  20 gatcgattatacgacttcgaaaatactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctg 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118993 gatcgattatacgacttcgacaatactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctg 11119092  T
Q  120 gaaataacgatgtcaatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgacca 219  Q
    ||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119093 gaaataacgttgtcaattttgatccaacaactcccgataaattcgacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgacca 11119192  T
Q  220 agaattgttctcaacacc 237  Q
    ||||||||||||||||||    
T  11119193 agaattgttctcaacacc 11119210  T

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Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 11111222 - 11111439
Alignment:
Q  20 gatcgattatacgacttcgaaaatactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctg 119  Q
    |||||||||||| ||||| | |||||||||||||| ||||||||||||||  ||||||||||| ||||||||| ||| ||||| ||||| |||||| |||    
T  11111222 gatcgattatacaacttcaacaatactggcaaacccgatccaactcttgatacaacatacttacaacagttgcgaaaccaatgccctcagaatggaactg 11111321  T
Q  120 gaaataacgatgtcaatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgacca 219  Q
    ||||||||  ||| |||||||| ||||| |||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11111322 gaaataaccgtgttaatttcgacccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgacca 11111421  T
Q  220 agaattgttctcaacacc 237  Q
    |||||| |||||||||||    
T  11111422 agaattattctcaacacc 11111439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 10793572 - 10793352
Alignment:
Q  20 gatcgattatacgacttcgaaaatactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctg 119  Q
    |||||||||||| |||||   ||||||||| |||||||||||||||||||  |||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  10793572 gatcgattatacaacttcagcaatactggcgaacctgatccaactcttgatacaacgtacttaaaacaattgcaaaacgaatgtcctcaaaatggacctg 10793473  T
Q  120 gaaataacgatgtcaatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgacca 219  Q
    ||||||||  ||| |||||||| ||||| |||||||||| ||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||    
T  10793472 gaaataaccgtgtaaatttcgacccaactactcctgatacattggacaagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgacca 10793373  T
Q  220 agaattgttctcaacaccaaa 240  Q
    ||||||||| |||||||||||    
T  10793372 agaattgttttcaacaccaaa 10793352  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 11149919 - 11150021
Alignment:
Q  133 caatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctca 232  Q
    ||||||||||||||| |||||||||||||| ||||||||||| |||   ||||||||||  |||||||||||||| |||||||| ||||| |||||||||    
T  11149919 caatttcgatccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctca 11150018  T
Q  233 aca 235  Q
    |||    
T  11150019 aca 11150021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 11156587 - 11156689
Alignment:
Q  133 caatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctca 232  Q
    ||||||||||||||| |||||||||||||| ||||||||||| |||  |||||||||||  |||||||| ||||| |||||||| ||||| |||||||||    
T  11156587 caatttcgatccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctca 11156686  T
Q  233 aca 235  Q
    |||    
T  11156687 aca 11156689  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 11137645 - 11137734
Alignment:
Q  133 caatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaaga 222  Q
    |||||| || ||||| |||||||||||||| |||||||||||||||  ||||||||| |||||||||||||||||||| |||||||||||    
T  11137645 caattttgacccaacgactcctgataaatttgacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaaga 11137734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 11145957 - 11146052
Alignment:
Q  140 gatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaaca 235  Q
    |||||||| |||||||||||||| ||||||||||| |||   ||||||||||  ||||| ||||||||||||||||| ||||| ||||||||||||    
T  11145957 gatccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaaca 11146052  T

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