View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_259 (Length: 245)
Name: NF10049A_low_259
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_259 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 31162578 - 31162361
Alignment:
| Q |
20 |
agaagcatgcttgaagttgaaacttgaaatggtaaaaacgggaatgcttgctttgtttaattccacatttcagacgctattagttacact-------gtc |
112 |
Q |
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| T |
31162578 |
agaagcatgcttgaagttgaaacttgaaatggtaaaaacgggaatgcttgctttgtttaattccacatttcagacgctattagttacactatctcctgtc |
31162479 |
T |
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| Q |
113 |
ctaactccaaagaaaaggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcgagactctc |
212 |
Q |
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| T |
31162478 |
ctaactccaaagaaaaggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcgagactctc |
31162379 |
T |
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| Q |
213 |
tgattttcattgtggtat |
230 |
Q |
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| T |
31162378 |
tgattttcattgtggtat |
31162361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 31160093 - 31160035
Alignment:
| Q |
120 |
caaagaaaaggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccat |
178 |
Q |
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| T |
31160093 |
caaagaaaaggcatcgttgcattcagggatgattctaacctgaagaaaggtgaatccat |
31160035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 31151183 - 31151086
Alignment:
| Q |
132 |
atttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcg-agactctctgattttcattgtggt |
228 |
Q |
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| T |
31151183 |
attttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggt |
31151086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 33265657 - 33265617
Alignment:
| Q |
165 |
aaaggtgaatccattggatcagagctccttggagcaatcga |
205 |
Q |
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| T |
33265657 |
aaaggtgaatccattggacccgagctccttcgagcaatcga |
33265617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 33274801 - 33274761
Alignment:
| Q |
165 |
aaaggtgaatccattggatcagagctccttggagcaatcga |
205 |
Q |
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| T |
33274801 |
aaaggtgaatccattggacccgagctccttcgagcaatcga |
33274761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 33288386 - 33288310
Alignment:
| Q |
129 |
ggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcga |
205 |
Q |
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| T |
33288386 |
ggtatttatgcatttagggatgacaccaatcttcaaaaaggtgaatccataggacctgagctccttcgagcaatcga |
33288310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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