View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_267 (Length: 244)

Name: NF10049A_low_267
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_267
NF10049A_low_267
[»] chr1 (3 HSPs)
chr1 (1-223)||(11340623-11340843)
chr1 (1-223)||(11498642-11498862)
chr1 (1-223)||(32197491-32197713)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11340623 - 11340843
Alignment:
Q  1 gaatttgtaagtatttaagcaattctacttctaaggagccagtgtgaacattaaagtactttcatgttctgatatattggcataagaggaagaaactaga 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||    |||||||||||||  |||||||||||||||||||||||||||||    
T  11340623 gaatttgtaagtatttaagcaattctacttctaaggagctagtgtgatcatttt--tactttcatgttcaaatatattggcataagaggaagaaactaga 11340720  T
Q  101 aagagacacaatatgaagagagtcaatgtttttaaatcactaactctggttcttacatttcttgcatttgcgccaaaaatggagagcgagatcataccac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11340721 aagagacacaatatgaagagagtcaatgtttttaaatcactaactctggttcttacatttcttgcatttgcgccgaaaatggagagcgagatcataccac 11340820  T
Q  201 cagttattcacctgccaccacca 223  Q
    |||||||||||||||||||||||    
T  11340821 cagttattcacctgccaccacca 11340843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11498642 - 11498862
Alignment:
Q  1 gaatttgtaagtatttaagcaattctacttctaaggagccagtgtgaacattaaagtactttcatgttctgatatattggcataagaggaagaaactaga 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||    |||||||||||||  |||||||||||||||||||||||||||||    
T  11498642 gaatttgtaagtatttaagcaattctacttctaaggagctagtgtgatcatttt--tactttcatgttcaaatatattggcataagaggaagaaactaga 11498739  T
Q  101 aagagacacaatatgaagagagtcaatgtttttaaatcactaactctggttcttacatttcttgcatttgcgccaaaaatggagagcgagatcataccac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11498740 aagagacacaatatgaagagagtcaatgtttttaaatcactaactctggttcttacatttcttgcatttgcgccgaaaatggagagcgagatcataccac 11498839  T
Q  201 cagttattcacctgccaccacca 223  Q
    |||||||||||||||||||||||    
T  11498840 cagttattcacctgccaccacca 11498862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32197713 - 32197491
Alignment:
Q  1 gaatttgtaagtatttaagcaattctacttctaaggagccagtgtgaacattaaagtactttcatgttctgatatattggcataagaggaagaaactaga 100  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  ||| |||| ||||||||||||||||||| |    
T  32197713 gaatttgcaagtatttaagcaattctacttctaaggagccggtgtgaacgttaaagtactttcatgttgagatgtattagcataagaggaagaaactaaa 32197614  T
Q  101 aagagacacaatatgaagagagtcaatgtttttaaatcactaactctggttcttacatttcttgcatttgcgccaaaaatggagagcgagatcataccac 200  Q
    || ||||||||||  |||||| || || ||||||| ||  ||||||||||||| |||||||||||||||||||||||| |||||||| ||||||  || |    
T  32197613 aacagacacaatacaaagagaatctatatttttaactcggtaactctggttctcacatttcttgcatttgcgccaaaagtggagagccagatcagtcctc 32197514  T
Q  201 cagttattcacctgccaccacca 223  Q
    |||||||||| ||||||||||||    
T  32197513 cagttattcagctgccaccacca 32197491  T

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