View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_27 (Length: 435)

Name: NF10049A_low_27
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_27
NF10049A_low_27
[»] chr4 (2 HSPs)
chr4 (4-426)||(40821517-40821938)
chr4 (4-109)||(40826201-40826306)
[»] chr7 (8 HSPs)
chr7 (4-304)||(20292021-20292311)
chr7 (15-124)||(20301393-20301502)
chr7 (4-102)||(20064893-20064991)
chr7 (4-109)||(20229247-20229352)
chr7 (4-109)||(20261830-20261935)
chr7 (4-100)||(20170431-20170527)
chr7 (4-100)||(20172424-20172520)
chr7 (4-124)||(20296617-20296737)
[»] scaffold0027 (1 HSPs)
scaffold0027 (81-126)||(135558-135603)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 4 - 426
Target Start/End: Original strand, 40821517 - 40821938
Alignment:
Q  4 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 103  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  40821517 ctttggagataagagtttcagtgtcctttatgtactgggatgatgtgatgttggttatggcaatactaacttgtaacaaagtgcaaaacaaaatgaacag 40821616  T
Q  104 aacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatgcaaaaacaaccactctttcttattaatgatgattt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  40821617 aacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaataatgattt 40821716  T
Q  204 gagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatttcac 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  40821717 gagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttctgaaaatctctatcattttaagaacttaatgttgtttgagtcatttcac 40821816  T
Q  304 tacttatttaggttatcannnnnnnnnnnnnnnnnnnnncctagaccgtcatttttatttcattaaatcaagtatgtatcctctcagatctacaagaatc 403  Q
    ||||||||||||||||||                     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40821817 tacttatttaggttatca-cttttcttttcttttttttccctagaccgtcatttttatttcatgaaatcaagtatgtatcctctcagatctacaagaatc 40821915  T
Q  404 atttctttattcaaaatattctt 426  Q
    ||||||||||||||||| |||||    
T  40821916 atttctttattcaaaattttctt 40821938  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 40826201 - 40826306
Alignment:
Q  4 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 103  Q
    |||||||||  |||||||| | |||||| ||| |||| |||||||||||| ||  ||| |||||||||| |||||   |||||||| ||| ||| ||||     
T  40826201 ctttggagagtagagtttcagggtccttgatgaattgagatgatgtgatggtgtctattgcaatactaaattgtagggaatagcaacacagaataaacaa 40826300  T
Q  104 aacaga 109  Q
    ||||||    
T  40826301 aacaga 40826306  T

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Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 4 - 304
Target Start/End: Complemental strand, 20292311 - 20292021
Alignment:
Q  4 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 103  Q
    ||||||||||||||||||| | |||||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||    
T  20292311 ctttggagataagagtttcagcgtccttgatgaattgggatgatgtgatggtgtttatggcaatattaacttgtaacaaatagcaaaacaaaatgaacag 20292212  T
Q  104 aacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatgcaaaaacaaccactctttcttattaatgatgattt 203  Q
    ||||||||||||||||||      ||||||  |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||    
T  20292211 aacagagagcatatttga------actgaa--acccattatatgatcaacaagtagactatgatacaaaaa-aaccactctttcttattaataatgattt 20292121  T
Q  204 gagatttc---cttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcattt 300  Q
    ||||||||   ||||| |||||||||||||||||||||| ||||||||  ||||| ||||    ||| |||| ||||| |||| ||| |||||| |||||    
T  20292120 gagatttccttcttaacgtcaagagtctaaaaaatcacaggtaaatcaaagttctaaaaa----tattatttcaaaaaattaatgttctttgagacattt 20292025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 20301502 - 20301393
Alignment:
Q  15 agagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacagagagca 114  Q
    |||||||| | |||||| ||| ||||||||||||||||| ||  |||  | ||||||||  ||||||||||| |||||| |||||||| |||| ||| ||    
T  20301502 agagtttcagggtccttgatgaattgggatgatgtgatggtgtctataccgatactaacacgtaacaaataggaaaacagaatgaacaaaacaaagaaca 20301403  T
Q  115 tatttgaaca 124  Q
     |||||||||    
T  20301402 gatttgaaca 20301393  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 20064893 - 20064991
Alignment:
Q  4 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaaca 102  Q
    |||||||||  || ||||| | |||||| ||| ||||||||||||||||| ||  |||  | |||||||| |||||||||||  |||||| ||||||||    
T  20064893 ctttggagagtagtgtttcagggtccttgatgaattgggatgatgtgatggtgtctataccgatactaacatgtaacaaatacaaaaacacaatgaaca 20064991  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 20229352 - 20229247
Alignment:
Q  4 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 103  Q
    |||||||||| |||||||| | ||| || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| |||||||||| |     
T  20229352 ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtaccaaatagcaacacaaaatgaataa 20229253  T
Q  104 aacaga 109  Q
    ||||||    
T  20229252 aacaga 20229247  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 20261935 - 20261830
Alignment:
Q  4 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 103  Q
    |||||||||| |||||||| | ||| || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| |||||||||| |     
T  20261935 ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtaccaaatagcaacacaaaatgaatac 20261836  T
Q  104 aacaga 109  Q
    ||||||    
T  20261835 aacaga 20261830  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 20170431 - 20170527
Alignment:
Q  4 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaa 100  Q
    |||||||||| |||||||| | ||| || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| ||||||||||    
T  20170431 ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtagcaaatagcaacacaaaatgaa 20170527  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 20172424 - 20172520
Alignment:
Q  4 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaa 100  Q
    |||||||||| |||||||| | ||| || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| ||||||||||    
T  20172424 ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtagcaaatagcaacacaaaatgaa 20172520  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 20296737 - 20296617
Alignment:
Q  4 ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag 103  Q
    |||| ||||| |||||||| | |||||| ||| ||||||| ||||| ||  ||  |||||||||||| |  |||||||||| |||||||| |||| | |     
T  20296737 cttttgagattagagtttcagggtccttgatgaattgggaagatgttatagtgtctatggcaatactcatgtgtaacaaattgcaaaacagaatggataa 20296638  T
Q  104 aacagagagcatatttgaaca 124  Q
    |||||| | || |||||||||    
T  20296637 aacagaaaacagatttgaaca 20296617  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 135558 - 135603
Alignment:
Q  81 aaatagcaaaacaaaatgaacagaacagagagcatatttgaacaac 126  Q
    ||||||||||||||||| |||| |||||||| || |||||||||||    
T  135558 aaatagcaaaacaaaattaacaaaacagagaacacatttgaacaac 135603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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