View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_272 (Length: 244)
Name: NF10049A_low_272
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_272 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1045608 - 1045813
Alignment:
| Q |
1 |
cgatcttttcttcactgtttgaatctattcgattaacaagtataataaataactcattgtaatcacgttttgtgctcctaattttttcaatttatcttgt |
100 |
Q |
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| T |
1045608 |
cgatcttttcttcactgtttgaatctattcgattaacaagtataataaataactcattgt-------------gctcctaattttttcaatttatcttgt |
1045694 |
T |
|
| Q |
101 |
tatttgttatttttggcaaacattctgtgtgtgtgactgaaatttttgttaaaatttaaagaaaatggaaaagtagtttgtttaaggagttgatatgact |
200 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1045695 |
tatctgttatttttggcaaacattctgtg--tgtgactgaaatttttgttaaaatttaaagaaaatggaaaagtagtttgtttaaggagttgatatgact |
1045792 |
T |
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| Q |
201 |
tgaattgtggctataacttat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1045793 |
tgaattgtggctataacttat |
1045813 |
T |
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