View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_273 (Length: 244)
Name: NF10049A_low_273
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_273 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 24666621 - 24666844
Alignment:
| Q |
6 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24666621 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
24666720 |
T |
|
| Q |
106 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| | |
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|
| T |
24666721 |
cagatttcagaggagttgaaaaagatgaagaaatataatagggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctca |
24666820 |
T |
|
| Q |
206 |
accatttattcaatcaaacggtat |
229 |
Q |
| |
|
|||||| ||||||||||||||||| |
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|
| T |
24666821 |
accattgattcaatcaaacggtat |
24666844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 34941782 - 34941551
Alignment:
| Q |
6 |
agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34941782 |
agttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
34941683 |
T |
|
| Q |
105 |
acagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatcta |
204 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||| |
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| T |
34941682 |
acagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctc |
34941583 |
T |
|
| Q |
205 |
aaccatttattcaatcaaacggtatattcttc |
236 |
Q |
| |
|
|||| || ||||||||||||||||| |||||| |
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|
| T |
34941582 |
aaccgttgattcaatcaaacggtattttcttc |
34941551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 18363426 - 18363653
Alignment:
| Q |
6 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
18363426 |
agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta |
18363523 |
T |
|
| Q |
106 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
205 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||| | |
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|
| T |
18363524 |
cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca |
18363621 |
T |
|
| Q |
206 |
accatttattcaatcaaacggtatattcttcg |
237 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||| |
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|
| T |
18363622 |
accattgattcaatcgaatggtattttcttcg |
18363653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 36599502 - 36599275
Alignment:
| Q |
6 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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|
| T |
36599502 |
agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta |
36599405 |
T |
|
| Q |
106 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
205 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||| | |
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|
| T |
36599404 |
cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca |
36599307 |
T |
|
| Q |
206 |
accatttattcaatcaaacggtatattcttcg |
237 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||| |
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|
| T |
36599306 |
accattgattcaatcgaatggtattttcttcg |
36599275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 8752465 - 8752390
Alignment:
| Q |
53 |
tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag |
128 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||| | | | |||| || |||||||||||||||||||| |
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|
| T |
8752465 |
tttttcattttcgaattgatgtagatgttttcagcaagcaacctatggattcactaatttcagaggagttgaaaag |
8752390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 6 - 125
Target Start/End: Original strand, 26240615 - 26240735
Alignment:
| Q |
6 |
agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
104 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26240615 |
agttatcaacaccaagaaattgggtttctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
26240714 |
T |
|
| Q |
105 |
acagatttcagaggagttgaa |
125 |
Q |
| |
|
||| |||||| ||||||||| |
|
|
| T |
26240715 |
acatatttcaagggagttgaa |
26240735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 26240779 - 26240870
Alignment:
| Q |
145 |
agggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccatttattcaatcaaacggtatattcttc |
236 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||| |||||| |
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|
| T |
26240779 |
agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtattttcttc |
26240870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 53242900 - 53242714
Alignment:
| Q |
53 |
tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg-aca |
151 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||| | ||||| ||||||||||||||| | |||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
53242900 |
tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagagagttgaagaggatgaacaaatataatagggaaca |
53242801 |
T |
|
| Q |
152 |
agatttaatgttaaaatgtctatatgttctc-aattttatttttaataaatctaaaccatttattcaatcaaacggtatattcttcg |
237 |
Q |
| |
|
| ||| | || |||||||||| |||||||| ||||||||||| ||||||||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
53242800 |
aaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtattttcttcg |
53242714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 43479315 - 43479456
Alignment:
| Q |
30 |
tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag |
128 |
Q |
| |
|
|||| ||||||| || | |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||| | |
|
|
| T |
43479315 |
tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattt-----------aagagttgaataa |
43479403 |
T |
|
| Q |
129 |
gatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttct |
181 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| |||||||||| ||||||| |
|
|
| T |
43479404 |
gatgaagaaatataataggaacaatattgtatgtgaaaatgtctagatgttct |
43479456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 19697568 - 19697413
Alignment:
| Q |
66 |
aatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaa |
165 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| | || ||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19697568 |
aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa |
19697476 |
T |
|
| Q |
166 |
aatgtctatatgttctcaattttatttttaataaatctaaaccatttattcaatcaaacggtat |
229 |
Q |
| |
|
|||||||| |||||||||||||| |||| || |||||| || |||| |||||||||||| |||| |
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|
| T |
19697475 |
aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtat |
19697413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 13265651 - 13265597
Alignment:
| Q |
175 |
atgttctcaattttatttttaataaatctaaaccatttattcaatcaaacggtat |
229 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| ||| |||| |||||||| |
|
|
| T |
13265651 |
atgttctcatttttatttttaataattctaaaccattgatttaatccaacggtat |
13265597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 32566462 - 32566563
Alignment:
| Q |
116 |
aggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccatttatt |
215 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||||||| |||| ||||||| || ||||||||||||| |||| ||||||||| |||||| | | |
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|
| T |
32566462 |
aggagttgaataagatga-gaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaat |
32566558 |
T |
|
| Q |
216 |
caatc |
220 |
Q |
| |
|
||||| |
|
|
| T |
32566559 |
caatc |
32566563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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