View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_28 (Length: 432)
Name: NF10049A_low_28
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_28 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 7 - 432
Target Start/End: Complemental strand, 33102513 - 33102088
Alignment:
| Q |
7 |
ctgatatgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaagg |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102513 |
ctgacatgaacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaagg |
33102414 |
T |
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| Q |
107 |
aaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgataca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102413 |
aaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgataca |
33102314 |
T |
|
| Q |
207 |
ctgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102313 |
ctgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaa |
33102214 |
T |
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| Q |
307 |
agagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcag |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102213 |
agagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcag |
33102114 |
T |
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| Q |
407 |
ctgcgatgaacctatagttcatggca |
432 |
Q |
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| T |
33102113 |
ctgcgatgaacctatagttcatggca |
33102088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 284
Target Start/End: Complemental strand, 52716731 - 52716522
Alignment:
| Q |
75 |
aagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaa |
174 |
Q |
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|||||||||||| ||||||||||| || || || | |||||||| |||||||||||||||||||| | || ||||| |||||| | | ||| ||||| |
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| T |
52716731 |
aagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaac |
52716632 |
T |
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| Q |
175 |
agaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaa |
274 |
Q |
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| T |
52716631 |
aaaaacaacataagagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagctcttaaaagaggga |
52716532 |
T |
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| Q |
275 |
ttcccataac |
284 |
Q |
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|||||||||| |
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| T |
52716531 |
ttcccataac |
52716522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
79 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
140 |
Q |
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| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 10838577 - 10838990
Alignment:
| Q |
15 |
aacatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataata |
114 |
Q |
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|||||| | ||| |||||||||||||| ||||| || |||||||||||||| ||||| | || | ||| || ||||| ||||||||||||| || |
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| T |
10838577 |
aacatgtaacttcccatcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatg |
10838676 |
T |
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| Q |
115 |
gaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaa |
214 |
Q |
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||||| || ||||| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | |||||||||||| ||||||||||||| |
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| T |
10838677 |
gaagccgcggtttctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaa |
10838776 |
T |
|
| Q |
215 |
ccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaa |
314 |
Q |
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|||||||||||||||| | | |||| ||||| |||||||||||||| || | | ||||||||||||||||||||||| || | |||||| | || || |
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| T |
10838777 |
ccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaa |
10838876 |
T |
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| Q |
315 |
gattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatg |
414 |
Q |
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|||||| |||||||| ||||| | ||||| ||||| ||||| | || |||||| | ||||||||||||||||||||||| || || || ||| |
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| T |
10838877 |
gattgttatcatccattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgattttttgaagtgtgtctgcagctatg |
10838976 |
T |
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| Q |
415 |
aacctatagttcat |
428 |
Q |
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||||| ||||||| |
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| T |
10838977 |
aacctgaagttcat |
10838990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 34971296 - 34971055
Alignment:
| Q |
16 |
acatgaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatag |
115 |
Q |
| |
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|||||||| |||||||| |||||||| ||||| || || | ||| ||| | ||||| | ||||| ||||||||||||||| || || || ||||||| |
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| T |
34971296 |
acatgaagtttaccatcttcaccaacttcagcttcagtttgaagtggctctttaccatccaaagaaagaacatcagaatcaactttgaatgatataatag |
34971197 |
T |
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| Q |
116 |
aagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaac |
215 |
Q |
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|| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | |||||| | ||| || |||||||||||||| |||||||| |
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| T |
34971196 |
aaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaaaacaacatcaatgtataccaaatgatacattgaagaac |
34971097 |
T |
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| Q |
216 |
cacaacttgaaccataagggtaccggaatattcaccatacat |
257 |
Q |
| |
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|| | |||||||||||||||||| |||| ||||||||||| |
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| T |
34971096 |
aactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 25038959 - 25038852
Alignment:
| Q |
186 |
caaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataacc |
285 |
Q |
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|||||| |||||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||| |
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| T |
25038959 |
caaagtataccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataacc |
25038860 |
T |
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| Q |
286 |
aaagtgtt |
293 |
Q |
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|||||||| |
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| T |
25038859 |
aaagtgtt |
25038852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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