View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_280 (Length: 243)
Name: NF10049A_low_280
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_280 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 28402040 - 28402211
Alignment:
| Q |
50 |
tttatgttacgatatattttatttgaacnnnnnnnnnnnttcaacaacaaagacaacacatccatataaattatataaattaaacacattgtctccactt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28402040 |
tttatgttacgatatattttatttgaacaaaaaaaaaa-ttcaacaacaaagacaacacatccatat---------aaattaaacacattgtctccactt |
28402129 |
T |
|
| Q |
150 |
caaattctctaagatcaaaacatatctcaaataaagggaagagaaattttttctagccttagctatcaaccacagatttctt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
28402130 |
caaattctctaagatcaaaacatatctcaaataaagggaagagaatttttttctagacttaactatcaaccacagaattctt |
28402211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 28587406 - 28587321
Alignment:
| Q |
148 |
ttcaaattctctaagatcaaaacatatctcaaataaagggaagagaaattttttcta--gccttagctatcaaccacagatttctt |
231 |
Q |
| |
|
|||||||||| |||||| |||| ||||||||||||||| |||||||| ||| |||| |||||||||||||||| ||||| |||| |
|
|
| T |
28587406 |
ttcaaattctgtaagattaaaagatatctcaaataaagtgaagagaattttgctctattgccttagctatcaaccgcagatctctt |
28587321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University