View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_281 (Length: 243)
Name: NF10049A_low_281
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_281 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 3429300 - 3429506
Alignment:
| Q |
23 |
ccatcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagat |
122 |
Q |
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| T |
3429300 |
ccatcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagat |
3429399 |
T |
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| Q |
123 |
atgggattggagtgtgccataaggagggagtaatagttgtgggggtgttgttggggtgtgtgtttagcattgtggtgggtatagtcctcattttgtcttc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3429400 |
atgggattggagtgtgccataaggagggagtaatagttgcgggggtgttgttggggtgtgtgtttagcattgtggtgggtatagtcctcattttgtcttc |
3429499 |
T |
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| Q |
223 |
tttgttt |
229 |
Q |
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||||||| |
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| T |
3429500 |
tttgttt |
3429506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 3425822 - 3426023
Alignment:
| Q |
24 |
catcttggttgttccttgagagtttacaaaaagagcatgctagtgccaacaacgccaaggctatgagtcccataatggctgctagtcctccaaagagata |
123 |
Q |
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|||||||||||| |||||||||| ||||| | |||||||||||| |||| ||||||||||||||||| || ||||| || |||||||||||||||||||| |
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| T |
3425822 |
catcttggttgtcccttgagagtctacaatatgagcatgctagtaccaataacgccaaggctatgagacctataatagcagctagtcctccaaagagata |
3425921 |
T |
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| Q |
124 |
tgggattggagtgtgccataaggagggagtaatagttgtgggggtgttgttggggtgtgtgtttagcattgtggtgggtatagtcctcattttgtcttct |
223 |
Q |
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||| ||||||||||||||||||||| ||| ||||||||| |||||| |||| |||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
3425922 |
tggcattggagtgtgccataaggagtgaggaatagttgttggggtgatgttagggtgtgtgtttagcaatttggtgggtatactcctcattttgtcttct |
3426021 |
T |
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| Q |
224 |
tt |
225 |
Q |
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|| |
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| T |
3426022 |
tt |
3426023 |
T |
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