View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_283 (Length: 242)

Name: NF10049A_low_283
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_283
NF10049A_low_283
[»] chr6 (5 HSPs)
chr6 (20-242)||(341202-341424)
chr6 (20-240)||(332912-333132)
chr6 (20-239)||(337167-337386)
chr6 (103-240)||(347412-347549)
chr6 (118-240)||(356086-356208)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 341424 - 341202
Alignment:
Q  20 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341424 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 341325  T
Q  120 gcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 219  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341324 gcatgcctcagtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 341225  T
Q  220 gcttggttaaaagccttctcaga 242  Q
    |||||||||||||||||||||||    
T  341224 gcttggttaaaagccttctcaga 341202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 333132 - 332912
Alignment:
Q  20 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 119  Q
    |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||    
T  333132 catcgtcactttcaacattgatttcatttttgttacaattttgctttagctcttcgcgctttgaagctatacacgaaaataggaatttatcaaatacttt 333033  T
Q  120 gcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 219  Q
    ||||||||| |||||||| |||||||| || |||||||||||  |||||| |||| |||||||||  |||||| ||||||||||||||||| | |||||     
T  333032 gcatgcctcggtcatttttttctcttccccaatttgaagccatttttgcatcttctaaacacaaacgggcacgatgtgtctatagaagatgcattcttca 332933  T
Q  220 gcttggttaaaagccttctca 240  Q
    |||||||||||||||||||||    
T  332932 gcttggttaaaagccttctca 332912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 337386 - 337167
Alignment:
Q  20 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 119  Q
    |||||| ||||| | |||| ||||||||||||||||  |||||||||||||||||||  |||||||| ||||||||| | ||||||||||||||||| ||    
T  337386 catcattactttgaccattaatttcatttttgttaccgtttttctttagctcttcgcattttgaagctatacacgaatataggaattgatcaaatacttt 337287  T
Q  120 gcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 219  Q
    |||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||||| |||||     
T  337286 gcatgcttcagtcatttttttctcttcaccgatttgaagccaactttgcaacttccaaacacaagccggcacagtgtgtctgtagaagatggattcttca 337187  T
Q  220 gcttggttaaaagccttctc 239  Q
    ||||||||||||||||||||    
T  337186 gcttggttaaaagccttctc 337167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 347412 - 347549
Alignment:
Q  103 aattgatcaaataccttgcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctat 202  Q
    |||||||||||||| |||||||| |  |||||||| |||||||| || |||||||||||  ||||||||||||||||||   | |||||  | |||||||    
T  347412 aattgatcaaatactttgcatgctttggtcatttttttctcttcaccaatttgaagccatttttgcaacttccaaacacttttaggcactatatgtctat 347511  T
Q  203 agaagatggactcttccgcttggttaaaagccttctca 240  Q
    |||| ||| |||||||   |||||||||||| ||||||    
T  347512 agaatatgcactcttcaatttggttaaaagctttctca 347549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 356086 - 356208
Alignment:
Q  118 ttgcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactctt 217  Q
    ||||||||||  ||||| || |||||||| || |||||||||||  ||||||||||||||||||   | |||||  | ||||||||||| |||  |||||    
T  356086 ttgcatgccttggtcatatttttctcttcaccaatttgaagccatttttgcaacttccaaacacttttaggcactttatgtctatagaatatgccctctt 356185  T
Q  218 ccgcttggttaaaagccttctca 240  Q
    |   |||||| ||||||||||||    
T  356186 cgatttggttgaaagccttctca 356208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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