View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_29 (Length: 432)

Name: NF10049A_low_29
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_29
NF10049A_low_29
[»] chr8 (9 HSPs)
chr8 (1-429)||(12287209-12287634)
chr8 (52-429)||(12266675-12267055)
chr8 (52-429)||(12282401-12282781)
chr8 (350-429)||(12256885-12256964)
chr8 (350-429)||(12264277-12264356)
chr8 (350-429)||(12270889-12270968)
chr8 (96-171)||(12270659-12270734)
chr8 (96-171)||(12256650-12256725)
chr8 (96-171)||(12264042-12264117)
[»] chr3 (3 HSPs)
chr3 (118-219)||(29197446-29197546)
chr3 (275-429)||(29197535-29197690)
chr3 (3-65)||(29197351-29197413)


Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 12287209 - 12287634
Alignment:
Q  1 aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  12287209 aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaacgtatattt-gct 12287307  T
Q  101 ttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatctctaaact 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12287308 ttttcaaaccaaatttcaaatacactgaaactacacaccaattacactct--ctttctttccctctttctcgtcactttccaaatcaaaatctctaaact 12287405  T
Q  201 taagcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacattcattcttaaagtacta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12287406 taagcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacaatcattcttaaagtacta 12287505  T
Q  301 acacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaact 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12287506 acacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaatt 12287605  T
Q  401 gaggatgcatatgttgttgttcgaggtga 429  Q
    |||||||||||||||||||||||||||||    
T  12287606 gaggatgcatatgttgttgttcgaggtga 12287634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 52 - 429
Target Start/End: Original strand, 12266675 - 12267055
Alignment:
Q  52 ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt 151  Q
    |||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |    
T  12266675 ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactcgt 12266774  T
Q  152 tctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatattcacacaacttattacataacacctcaattccatc 251  Q
      ||||| |||||||||||| |||||||||| ||||||||| | || ||||||||||||||||||| ||||||||||| |||||||||||||||||  ||    
T  12266775 a-tttctctccctctttctcatcactttccatatcaaaatcccaaaccttaagcttattatatatttacacaacttataacataacacctcaattcactc 12266873  T
Q  252 aaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaaca--cacatttgtgcacaac-actattaaattctatacgatgggtgtag 347  Q
    | || ||  |||||| ||||| |||||| |||||||||||| |  | ||||||   |  ||| | |||||| |  |||||||||| ||| ||||||||||    
T  12266874 acaataaacttgaaggacataacaatatccattcattcttacaccagctaacaggaagttttattcacaactaacattaaattctctactatgggtgtag 12266973  T
Q  348 cctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 429  Q
    ||||||  ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||    
T  12266974 cctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcgttcgaggtga 12267055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 52 - 429
Target Start/End: Original strand, 12282401 - 12282781
Alignment:
Q  52 ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt 151  Q
    |||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |    
T  12282401 ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactcgt 12282500  T
Q  152 tctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatattcacacaacttattacataacacctcaattccatc 251  Q
      ||||| |||||||||||| |||||||||| ||||||||| | || ||||| ||||||||||||||||||||||||| |||||||||||||||||  ||    
T  12282501 a-tttctctccctctttctcatcactttccatatcaaaatcccaaaccttaaccttattatatattcacacaacttataacataacacctcaattcactc 12282599  T
Q  252 aaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaaca--cacatttgtgcacaac-actattaaattctatacgatgggtgtag 347  Q
    | || ||  |||||| ||||| |||||| |||||||||||| |  | ||||||   |  ||| | |||||| |  |||||||||| ||| ||||||||||    
T  12282600 acaataaacttgaaggacataacaatatccattcattcttacaccagctaacaggaagttttattcacaactaacattaaattctctactatgggtgtag 12282699  T
Q  348 cctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 429  Q
    ||||||  ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||    
T  12282700 cctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcgttcgaggtga 12282781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 12256885 - 12256964
Alignment:
Q  350 tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 429  Q
    ||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  12256885 tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtga 12256964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 12264277 - 12264356
Alignment:
Q  350 tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 429  Q
    ||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  12264277 tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtga 12264356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 12270889 - 12270968
Alignment:
Q  350 tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 429  Q
    ||||| ||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  12270889 tcacaaacattagaaattacgattatatctggagaaaatattcatgtaacagaggatgcatacgttgttgttcgaggtga 12270968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 12270659 - 12270734
Alignment:
Q  96 ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc 171  Q
    |||||||| |||| || | |||||||||| |||| | || |||||||||||||||||||||||| |||||||||||    
T  12270659 ttgcttttccaaatcataattcaaatacattgaaccaaccaaccaattacactctttctttcttcccctctttctc 12270734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 12256650 - 12256725
Alignment:
Q  96 ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc 171  Q
    ||||||||||||| |||| | |||||||| |||| | || |||||||||||| ||||||||||| |||| ||||||    
T  12256650 ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc 12256725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 12264042 - 12264117
Alignment:
Q  96 ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc 171  Q
    ||||||||||||| |||| | |||||||| |||| | || |||||||||||| ||||||||||| |||| ||||||    
T  12264042 ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc 12264117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 29197446 - 29197546
Alignment:
Q  118 aaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatatt 217  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||| | | ||||||||||||| ||||||||    
T  29197446 aaatacaccgaaacaacaaaccaattacactctttctttctttccctctttctcaccactttccatatcaaaa-cccaaaacttaagcttaatatatatt 29197544  T
Q  218 ca 219  Q
    ||    
T  29197545 ca 29197546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 429
Target Start/End: Original strand, 29197535 - 29197690
Alignment:
Q  275 aatatacattcattctt-aaagtactaacacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggtt 373  Q
    |||||| |||||||||| |||||||  |||||   ||||||||||||  || ||||| | ||| |||||| |||| ||||  |||||||||||||| |||    
T  29197535 aatatatattcattctttaaagtacacacacattcttgtgcacaacaacatcaaattttctactatgggtatagcttcacgcacattagaaataacagtt 29197634  T
Q  374 atatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 429  Q
    ||| |||| |||||||||||| |||||||||||||||| ||||| |||||||||||    
T  29197635 ataaccggtgaaaatattcatataactgaggatgcatacgttgtcgttcgaggtga 29197690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 29197351 - 29197413
Alignment:
Q  3 tatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttataca 65  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  29197351 tatcaaccaaacagcgtattagcggatatatccacggaattgtcttgtgctgcaagtaataca 29197413  T

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