View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_290 (Length: 241)
Name: NF10049A_low_290
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_290 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 280598 - 280386
Alignment:
| Q |
14 |
agacaagctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaacatc |
113 |
Q |
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| T |
280598 |
agacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaacatc |
280499 |
T |
|
| Q |
114 |
tttataataataaactatagtagtattgaattgtgatattgaacatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccatacgt |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
280498 |
tttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccatacgt |
280399 |
T |
|
| Q |
214 |
acctgtttatttg |
226 |
Q |
| |
|
||||||||||||| |
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| T |
280398 |
acctgtttatttg |
280386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 635254 - 635466
Alignment:
| Q |
14 |
agacaagctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaacatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
635254 |
agacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaacatc |
635353 |
T |
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| Q |
114 |
tttataataataaactatagtagtattgaattgtgatattgaacatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccatacgt |
213 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
635354 |
tttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccatacgt |
635453 |
T |
|
| Q |
214 |
acctgtttatttg |
226 |
Q |
| |
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||||||||||||| |
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| T |
635454 |
acctgtttatttg |
635466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 821057 - 821269
Alignment:
| Q |
14 |
agacaagctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaacatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
821057 |
agacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaacatc |
821156 |
T |
|
| Q |
114 |
tttataataataaactatagtagtattgaattgtgatattgaacatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccatacgt |
213 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
821157 |
tttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccatacgt |
821256 |
T |
|
| Q |
214 |
acctgtttatttg |
226 |
Q |
| |
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||||||||||||| |
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|
| T |
821257 |
acctgtttatttg |
821269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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