View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_298 (Length: 239)
Name: NF10049A_low_298
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_298 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 24546002 - 24546231
Alignment:
| Q |
9 |
aacaatataattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatctgagtctactctaaattgaagca |
108 |
Q |
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| T |
24546002 |
aacattataattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatttgagtctactctaaattgaagca |
24546101 |
T |
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| Q |
109 |
aacactatggaattaccggtccaaataaaagaagcattcatgggtttgtagaaagaacgaaaaaagaagcaattatggccatgccatttatatcataata |
208 |
Q |
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| T |
24546102 |
aacactatggaattaccagtccaaa-aaaagaagcattcatgggtttgtagaaagaacgaaaaaagaagcaatgatggccatgtcatttatatcataata |
24546200 |
T |
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| Q |
209 |
gagagcttaattttgtaatgtaattagtaaa |
239 |
Q |
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| T |
24546201 |
gagagcttaattttgtaatataattagtaaa |
24546231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 855 - 722
Alignment:
| Q |
16 |
taattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatctgagtctactctaaattgaagcaaacacta |
115 |
Q |
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| T |
855 |
taattgaagcataaaacctataagagact-ttaagtccaatcttaaagatgaagtcaatcttact-aatttgagtcta-----aattgaagcaaacactt |
763 |
T |
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| Q |
116 |
tggaattaccg-gtccaaataaaagaagcattcatgggttt |
155 |
Q |
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| T |
762 |
tggaatgaccaagtccaaataaaagaagcattcatgggttt |
722 |
T |
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