View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_3 (Length: 643)
Name: NF10049A_low_3
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 195 - 618
Target Start/End: Complemental strand, 48183912 - 48183489
Alignment:
| Q |
195 |
gatgatgtctttgttattgcaatgctggagcagggataggaacctttctgcattgaaaatgagtttgaatccggtgacacaatacgattcaagctttttg |
294 |
Q |
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||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48183912 |
gatgatgtctttgttatcgcaacgctggagtagggataggaacctttctgcattgaaaatgagtttgaatccggtgacacaatacgattcaagctttttg |
48183813 |
T |
|
| Q |
295 |
atggacctttcagccaccacgttcacgttttcaaaatcgataaataagtaatgatgttgcgaatgtttatgttttgttataactaggaactctgcattat |
394 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48183812 |
atggacctttcagccaccacgtttacgttttcaaaatcgataaataagtcatgatgttgcgaatgtttatgttttgttataactaggaactctgcattat |
48183713 |
T |
|
| Q |
395 |
ggttgcttacttttcgtatctatgaacaatgcttctactttgttatttcccttgatttgctcatttgtggccaatgcttctattatgttattttccttaa |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
48183712 |
ggttgcttacttttcgtatctatgaacaatgcttctactttgttatttcccttgatttgctcatttgtggccaatgcttcgattatgttatttctcttaa |
48183613 |
T |
|
| Q |
495 |
tttgttcaagtgtgaaggatgcttctatttctttatgttgaagtataattaaaaaatgtattttacttgctattctattctttttcgtttataagcctgt |
594 |
Q |
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| T |
48183612 |
tttgttcaagtgtgaaggatgcttctatttctttatgttgaagtataattaaaaaatgtattttatttgctattctattcttttttgtttataagcctgt |
48183513 |
T |
|
| Q |
595 |
gaatttgacagtttaacgttttag |
618 |
Q |
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| T |
48183512 |
gaatttgacagtttaacattttag |
48183489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 48185457 - 48185282
Alignment:
| Q |
27 |
tctatcttttgaatacttcttttaatcgtatatatgtatattgtctaccatatttaggtccttaatcgagatttcaaggaattcctttggcaatatgatt |
126 |
Q |
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| T |
48185457 |
tctatcttttgaatacttcttttaatcgtatatatgtatattgtctaccatattcaggtccttaatcgagatttcaaggagttcctttggcaatatgatt |
48185358 |
T |
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| Q |
127 |
ttgaccacttggttctttgcggaaaactcggcaatccgagaacaacacatgaggtcaaatttcatagggatgatgtc |
203 |
Q |
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| T |
48185357 |
ttgaccacttggttctttgcggaaaactcggcaatccgagaacaacatgtgaggtcaaatttcata-ggatgatgtc |
48185282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 19341303 - 19341431
Alignment:
| Q |
22 |
ttatttctatcttttgaatacttcttttaatcgtatatatgtatattgtctaccatatttaggtccttaatcgagatttcaaggaattcctttggcaata |
121 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| | |||| ||| ||| |||| || ||||||||||||||||| || ||||||| |||||| |
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| T |
19341303 |
ttatttctatcctttgaatacttcttttaaccgtatatat--acattgcctatcatgtttacgtgcttaatcgagatttcaaagacttcctttcgcaata |
19341400 |
T |
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| Q |
122 |
tgattttgaccacttggttctttgcggaaaa |
152 |
Q |
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||||||| |||||||||| || ||||||||| |
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| T |
19341401 |
tgattttaaccacttggtcctatgcggaaaa |
19341431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 222 - 329
Target Start/End: Original strand, 20266424 - 20266531
Alignment:
| Q |
222 |
gagcagggataggaacctttctgcattgaaaatgagtttgaatccggtgacacaatacgattcaagctttttgatggacctttcagccaccacgttcacg |
321 |
Q |
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||||| |||| |||||||||||||| ||||||| | |||| ||||||||| | |||| |||||||||| ||||||||||||||||||||| ||||||| | |
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| T |
20266424 |
gagcatggatgggaacctttctgcactgaaaataaatttgtatccggtgataaaatatgattcaagctctttgatggacctttcagccactacgttcatg |
20266523 |
T |
|
| Q |
322 |
ttttcaaa |
329 |
Q |
| |
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|||||||| |
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| T |
20266524 |
ttttcaaa |
20266531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 378
Target Start/End: Original strand, 20249725 - 20249821
Alignment:
| Q |
282 |
ttcaagctttttgatggacctttcagccaccacgttcacgttttcaaaatcgataaataagtaatgatgttgcgaatgtttatgttttgttataact |
378 |
Q |
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|||||||| ||||||||||||||||||||| | ||||| ||||||||| | ||| || || | |||||||||||| || |||||||| |||||| |
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| T |
20249725 |
ttcaagctctttgatggacctttcagccactaagttcatgttttcaaagtagatggttaggtcttaatgttgcgaatgattctgttttgtaataact |
20249821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 617
Target Start/End: Original strand, 20249953 - 20250005
Alignment:
| Q |
565 |
tattctattctttttcgtttataagcctgtgaatttgacagtttaacgtttta |
617 |
Q |
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|||||| |||||||| |||||||| | |||||||||||||||||| ||||||| |
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| T |
20249953 |
tattctcttctttttagtttataaacatgtgaatttgacagtttatcgtttta |
20250005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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