View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_302 (Length: 238)

Name: NF10049A_low_302
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_302
NF10049A_low_302
[»] chr1 (3 HSPs)
chr1 (120-229)||(9630623-9630739)
chr1 (1-49)||(9630810-9630858)
chr1 (189-218)||(2896175-2896204)
[»] chr8 (3 HSPs)
chr8 (171-218)||(17751633-17751680)
chr8 (171-218)||(17760620-17760667)
chr8 (171-216)||(20873027-20873072)
[»] chr7 (1 HSPs)
chr7 (167-213)||(12289067-12289113)
[»] chr2 (2 HSPs)
chr2 (166-217)||(30404905-30404956)
chr2 (167-218)||(36409681-36409732)
[»] chr3 (1 HSPs)
chr3 (170-216)||(26492261-26492307)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 9630739 - 9630623
Alignment:
Q  120 cttctatattagagtgctatagaagcaattatgttttcttcttttaaaatctatgaagcacggata-------caaacacaacacggacactgacacgcc 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||    
T  9630739 cttctatattagagtgctatagaagcatttatgttttcttcttttaaaatctatgaagcacggatacagacaccagacacaacacggacactgacacgcc 9630640  T
Q  213 gacaccagacacaacac 229  Q
    |||||||||||||||||    
T  9630639 gacaccagacacaacac 9630623  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9630858 - 9630810
Alignment:
Q  1 ttcaattagttaggggtttgcatgattcataaaccaaacctagtttatg 49  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  9630858 ttcaattagttaggggtttgcatgattcataaaccaaaccaaatttatg 9630810  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 218
Target Start/End: Complemental strand, 2896204 - 2896175
Alignment:
Q  189 acacaacacggacactgacacgccgacacc 218  Q
    ||||||||||||||||||||||||||||||    
T  2896204 acacaacacggacactgacacgccgacacc 2896175  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 17751633 - 17751680
Alignment:
Q  171 tatgaagcacggatacaaacacaacacggacactgacacgccgacacc 218  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  17751633 tatgaagcatggatacatacacaacacggacactgacacgccgacacc 17751680  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 17760620 - 17760667
Alignment:
Q  171 tatgaagcacggatacaaacacaacacggacactgacacgccgacacc 218  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  17760620 tatgaagcatggatacatacacaacacggacactgacacgccgacacc 17760667  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 20873027 - 20873072
Alignment:
Q  171 tatgaagcacggatacaaacacaacacggacactgacacgccgaca 216  Q
    ||||||||||| ||||  |||| |||||||||||||||||||||||    
T  20873027 tatgaagcacgaatacggacacgacacggacactgacacgccgaca 20873072  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 12289067 - 12289113
Alignment:
Q  167 aatctatgaagcacggatacaaacacaacacggacactgacacgccg 213  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  12289067 aatctatgaagcacggatacagacacaacacggacaccgacacgccg 12289113  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 30404956 - 30404905
Alignment:
Q  166 aaatctatgaagcacggatacaaacacaacacggacactgacacgccgacac 217  Q
    |||||||||||||||||||||  |||  ||||||||||||||||||||||||    
T  30404956 aaatctatgaagcacggatacggacatgacacggacactgacacgccgacac 30404905  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 36409732 - 36409681
Alignment:
Q  167 aatctatgaagcacggatacaaacacaacacggacactgacacgccgacacc 218  Q
    ||||||||||||||||||||| |||| ||||||| ||| ||| |||||||||    
T  36409732 aatctatgaagcacggatacagacacgacacggatactcacatgccgacacc 36409681  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 26492307 - 26492261
Alignment:
Q  170 ctatgaagcacggatacaaacacaacacggacactgacacgccgaca 216  Q
    |||||||||||| ||||  |||| |||||||||||||||||||||||    
T  26492307 ctatgaagcacgaatacggacacgacacggacactgacacgccgaca 26492261  T

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