View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_303 (Length: 238)

Name: NF10049A_low_303
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_303
NF10049A_low_303
[»] scaffold0055 (1 HSPs)
scaffold0055 (13-219)||(2184-2392)
[»] scaffold0052 (1 HSPs)
scaffold0052 (13-219)||(82143-82351)
[»] chr3 (5 HSPs)
chr3 (99-219)||(13231331-13231451)
chr3 (99-219)||(27427003-27427123)
chr3 (99-212)||(40511541-40511653)
chr3 (13-78)||(13230922-13230989)
chr3 (29-75)||(40511146-40511194)
[»] chr4 (1 HSPs)
chr4 (99-219)||(18354174-18354295)
[»] chr2 (1 HSPs)
chr2 (99-215)||(34150983-34151099)
[»] chr8 (1 HSPs)
chr8 (99-164)||(27153182-27153247)
[»] scaffold0689 (1 HSPs)
scaffold0689 (170-216)||(4579-4625)


Alignment Details
Target: scaffold0055 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 2392 - 2184
Alignment:
Q  13 tgaataggacaaaccactctttgtttgct--aggacaaaacaattagagttaggctcgatcaacgggatatttccataaaccagcgtttattcttcctaa 110  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  2392 tgaataggacaaaccactctttgtttgcttcagaacaaaacaattagagttaggctcggtcaacaggatatttccataaaccagcgtttattcttcctaa 2293  T
Q  111 accagcgtttatatagatatttccaatnnnnnnntcttgtttggcaagtcaaaagtatatttgacatctcctcatctgcaatcaattctcgatgtgaaaa 210  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2292 accagcgtttatatagatatttccaataaaaaaaatttgtttggcaagtcaaaagtatatttgacatctcctcatctgcaaccaattctcgatgtgaaaa 2193  T
Q  211 cacagatac 219  Q
    |||||||||    
T  2192 cacagatac 2184  T

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Target: scaffold0052 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 82143 - 82351
Alignment:
Q  13 tgaataggacaaaccactctttgtttgct--aggacaaaacaattagagttaggctcgatcaacgggatatttccataaaccagcgtttattcttcctaa 110  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  82143 tgaataggacaaaccactctttgtttgcttcagaacaaaacaattagagttaggctcggtcaacaggatatttccataaaccagcgtttattcttcctaa 82242  T
Q  111 accagcgtttatatagatatttccaatnnnnnnntcttgtttggcaagtcaaaagtatatttgacatctcctcatctgcaatcaattctcgatgtgaaaa 210  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  82243 accagcgtttatatagatatttccaataaaaaaaatttgtttggcaagtcaaaagtatatttgacatctcctcatctgcaaccaattctcgatgtgaaaa 82342  T
Q  211 cacagatac 219  Q
    |||||||||    
T  82343 cacagatac 82351  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 13231331 - 13231451
Alignment:
Q  99 tattcttcctaaaccagcgtttatatagatatttccaatnnnnnnntcttgtttggcaagtcaaaagtatatttgacatctcctcatctgcaatcaattc 198  Q
    ||||||||||||||||| |||||| ||||||||||||||       | |||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  13231331 tattcttcctaaaccagggtttatttagatatttccaataaattttttttgtttggcaagtcaaaagtctatttgacatctcctcatctgcaaccaattc 13231430  T
Q  199 tcgatgtgaaaacacagatac 219  Q
    |||||||||||||||||||||    
T  13231431 tcgatgtgaaaacacagatac 13231451  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 27427003 - 27427123
Alignment:
Q  99 tattcttcctaaaccagcgtttatatagatatttccaatnnnnnnntcttgtttggcaagtcaaaagtatatttgacatctcctcatctgcaatcaattc 198  Q
    |||||||||||||||||||||||| ||||||||||||||         ||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  27427003 tattcttcctaaaccagcgtttatttagatatttccaataaaaaaaatttgtttgacaagtcaaaagtatatttgacatctcctcatctgcaaccaattc 27427102  T
Q  199 tcgatgtgaaaacacagatac 219  Q
    | |||||||||||||||||||    
T  27427103 ttgatgtgaaaacacagatac 27427123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 40511541 - 40511653
Alignment:
Q  99 tattcttcctaaaccagcgtttatatagatatttccaatnnnnnnntcttgtttggcaagtcaaaagtatatttgacatctcctcatctgcaatcaattc 198  Q
    |||||||||||||||||||||||| ||||||||||||||       | ||||||||||||| ||||||||||||||||| | |||| |||||| ||||||    
T  40511541 tattcttcctaaaccagcgtttatttagatatttccaatattatttt-ttgtttggcaagtaaaaagtatatttgacattttctcacctgcaaccaattc 40511639  T
Q  199 tcgatgtgaaaaca 212  Q
    ||| ||| ||||||    
T  40511640 tcgttgtaaaaaca 40511653  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 13230922 - 13230989
Alignment:
Q  13 tgaataggacaaaccactctttgtttgct--aggacaaaacaattagagttaggctcgatcaacggga 78  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||    
T  13230922 tgaataggacaaaccactctttgtttgcttcagaacaaaacaattagagttaggctcggtcaacggga 13230989  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 40511146 - 40511194
Alignment:
Q  29 ctctttgtttgct--aggacaaaacaattagagttaggctcgatcaacg 75  Q
    |||||||||||||  || |||||||||||||||||||||||||||||||    
T  40511146 ctctttgtttgctttagaacaaaacaattagagttaggctcgatcaacg 40511194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 18354295 - 18354174
Alignment:
Q  99 tattcttcctaaaccagcgtttatatagatatttccaatnnnnnnntcttgttt-ggcaagtcaaaagtatatttgacatctcctcatctgcaatcaatt 197  Q
    ||||||||||||||||| |||||| ||||||||||||||       | |||||| |||||||||||||| |||||||||||||||||||||||| |||||    
T  18354295 tattcttcctaaaccagggtttatttagatatttccaataaattttttttgttttggcaagtcaaaagtctatttgacatctcctcatctgcaaccaatt 18354196  T
Q  198 ctcgatgtgaaaacacagatac 219  Q
    ||||||||||||||||||||||    
T  18354195 ctcgatgtgaaaacacagatac 18354174  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 34151099 - 34150983
Alignment:
Q  99 tattcttcctaaaccagcgtttatatagatatttccaatnnnnnnntcttgtttggcaagtcaaaagtatatttgacatctcctcatctgcaatcaattc 198  Q
    |||||||| ||||||| | ||||| ||||||||| ||||       | ||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  34151099 tattcttcttaaaccatcatttatttagatattttcaataattgttttttgtttggcaagtcaaaagtatatttgacatctcctcatatgcaaccaattc 34151000  T
Q  199 tcgatgtgaaaacacag 215  Q
    || |||| |||||||||    
T  34150999 tctatgtcaaaacacag 34150983  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 27153247 - 27153182
Alignment:
Q  99 tattcttcctaaaccagcgtttatatagatatttccaatnnnnnnntcttgtttggcaagtcaaaa 164  Q
    ||||||||||||||||| |||||| ||||||||||||||       | ||||||||||||||||||    
T  27153247 tattcttcctaaaccagtgtttatttagatatttccaataaattttttttgtttggcaagtcaaaa 27153182  T

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Target: scaffold0689 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0689
Description:

Target: scaffold0689; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 4625 - 4579
Alignment:
Q  170 tttgacatctcctcatctgcaatcaattctcgatgtgaaaacacaga 216  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||||    
T  4625 tttgacatctcttcatctgcaaagaattctcggtgtgaaaacacaga 4579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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