View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_307 (Length: 236)
Name: NF10049A_low_307
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_307 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 17117595 - 17117389
Alignment:
| Q |
16 |
agagagaaaaagttatgtcgactattgtggacacccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccata |
115 |
Q |
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| T |
17117595 |
agagagaaaaagttatgtcgactattgtggacacccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccata |
17117496 |
T |
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| Q |
116 |
tcaaagcttggaacaaatattaagggaattacaagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaacgcgg |
215 |
Q |
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| T |
17117495 |
tcaaagcttggaacaaatattaaggtaattacaagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaacgcgg |
17117396 |
T |
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| Q |
216 |
tgttgtg |
222 |
Q |
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||||||| |
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| T |
17117395 |
tgttgtg |
17117389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 17107269 - 17107429
Alignment:
| Q |
50 |
ccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatattaagggaattacaa |
149 |
Q |
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||||| |||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |
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| T |
17107269 |
ccatctgctataggggaagagaagtattgtgcattatcccttaaatcaatgatgaattttgccatatcaaagcttggaactaatattaaggtgatttcaa |
17107368 |
T |
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| Q |
150 |
gctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaa |
210 |
Q |
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| T |
17107369 |
gttcctttgcccaaaaccaagatcaatataaggtggatgaagtgaagaaaattggagacaa |
17107429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 36 - 210
Target Start/End: Original strand, 17004073 - 17004247
Alignment:
| Q |
36 |
actattgtggacacccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatat |
135 |
Q |
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| T |
17004073 |
actattgtagaagcccatcagctataggagaagataagtattgtgcactatccctagaatcaatggtagattttgccatttcaaagcttgggaccaacat |
17004172 |
T |
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| Q |
136 |
taagggaattacaagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaa |
210 |
Q |
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| T |
17004173 |
taaggtgatttcaagttcctttgccaaaaataaggaccaatatgtggtggatgaagtgaaaaaaattggagacaa |
17004247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 17986811 - 17986649
Alignment:
| Q |
48 |
acccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatattaagggaattac |
147 |
Q |
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| T |
17986811 |
acccagcagctataggagaacacaagtattgcgcatcaaccctagaatcaatgatagatttcgccatttcaaagcttggaaaaaatattaagttgatttc |
17986712 |
T |
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| Q |
148 |
aagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaa |
210 |
Q |
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||| |||||||| ||||||||||| ||||||| || | ||||||||||||||||||||||| |
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| T |
17986711 |
aagttcctttgcacaaaaccaagaccaatatatagtacaggaagtgaagaaaattggagacaa |
17986649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 17945658 - 17945477
Alignment:
| Q |
41 |
tgtggacacccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatattaagg |
140 |
Q |
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|||||| ||||||| |||||||||||||| || | |||||| || ||| ||||||||||| |||| ||||| ||||||||||||| |||||||| | |
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| T |
17945658 |
tgtggaaacccatcggctataggagaagagaaacactgtgcatattcactagaatcaatgatggatttcgccatttcaaagcttggaaagaatattaaag |
17945559 |
T |
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| Q |
141 |
gaattacaagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaacgcggtgttgtg |
222 |
Q |
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| T |
17945558 |
tgatgtcaagttcattttctcaaagccaagaccaatatatggtggaggaagtgagaaaaataggagacaacgcagtgatgtg |
17945477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 17956647 - 17956475
Alignment:
| Q |
50 |
ccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatattaagggaattacaa |
149 |
Q |
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|||||||| ||||| ||||| || ||||||||| ||| ||| ||||||||||| ||||||| || ||||||||||||| ||||| || | || ||| |
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| T |
17956647 |
ccatcagcaataggggaagacaaacattgtgcaccatcactagaatcaatgatggattttgcaatttcaaagcttggaaagaatatcaaagtgatgtcaa |
17956548 |
T |
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| Q |
150 |
gctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaacgcggtgttgtg |
222 |
Q |
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| T |
17956547 |
gttccttttctaaaaatcatgaccaatatgtggtggaagaagtgaataaaataggagacaacgcagtgatgtg |
17956475 |
T |
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