View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_31 (Length: 431)

Name: NF10049A_low_31
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_31
NF10049A_low_31
[»] chr6 (1 HSPs)
chr6 (10-389)||(8159095-8159474)
[»] chr4 (2 HSPs)
chr4 (21-231)||(18701668-18701878)
chr4 (231-264)||(18701618-18701651)
[»] chr3 (1 HSPs)
chr3 (36-314)||(4084080-4084374)
[»] chr8 (13 HSPs)
chr8 (36-314)||(44312207-44312489)
chr8 (42-314)||(44301308-44301596)
chr8 (37-222)||(43896073-43896255)
chr8 (42-228)||(44306520-44306704)
chr8 (317-408)||(44312081-44312172)
chr8 (317-418)||(43895789-43895890)
chr8 (320-418)||(44306213-44306313)
chr8 (58-144)||(43895619-43895705)
chr8 (376-429)||(44301178-44301230)
chr8 (322-399)||(44305709-44305785)
chr8 (319-357)||(44301233-44301271)
chr8 (58-144)||(44306043-44306129)
chr8 (322-367)||(43895316-43895361)
[»] chr5 (1 HSPs)
chr5 (39-214)||(35856845-35857017)
[»] chr7 (1 HSPs)
chr7 (99-142)||(15040305-15040348)


Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 8159095 - 8159474
Alignment:
Q  10 atgagagtgaggaagttaatgaaatcaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttt 109  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159095 atgagagtgaggaagttgataaaatcaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttt 8159194  T
Q  110 taccgatgggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggcgagaaattttcaaatggtgtgaat 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8159195 taccgatgggtctgttagatatataatgacttctgctgctgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaat 8159294  T
Q  210 tgattcattctagagaaataattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaatta 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8159295 tgattcattctagagaaataattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatgctgaatctgttgcttaatta 8159394  T
Q  310 ttgatactgtgttctgcatttaacacttgatcctatctctgctgtcaatattatctatttgattcttaagtttaacattt 389  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8159395 ttgatactgtgttctgcatttaacacttgatcctatctctgttgtcaatattatctatttgattcttaagtttaacattt 8159474  T

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Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 18701878 - 18701668
Alignment:
Q  21 gaagttaatgaaatcaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccg---atg 117  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||    
T  18701878 gaagttaataaaatcgaggaagttgatgaagctcatgctggagaaattgtttttgtttttgatgctcatcttgaatctggagatacttttaccgccaatg 18701779  T
Q  118 ggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggcgagaaattttcaaatggtgtgaattgattcat 217  Q
    ||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||||  ||  | | |||||||||||||||||||||||||||    
T  18701778 ggtctgttagatatacaatgacttctgct---gatgttcctgcttattcggtctcaaaagattccgggcatacattttcaaatggtgtgaattgattcat 18701682  T
Q  218 tctagagaaataat 231  Q
    ||||||||||||||    
T  18701681 tctagagaaataat 18701668  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 18701651 - 18701618
Alignment:
Q  231 ttggtttggtttattagctttgcaatggtttgtt 264  Q
    ||||||||||||||||||||||||||||||||||    
T  18701651 ttggtttggtttattagctttgcaatggtttgtt 18701618  T

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Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 36 - 314
Target Start/End: Complemental strand, 4084374 - 4084080
Alignment:
Q  36 aaggaagttgatgaagctcatgctggagaaattgtttttgtgtt------tgatgctcatcttgaatctggagatacttttaccgatgggtctgttagat 129  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||      |||||||  |||| ||||||||||||||||||| || |||||| ||||||    
T  4084374 aaggcagttgatgaagctcatgctggagaacttgttattgtgttaaagtttgatgctattcttaaatctggagatacttttactgacgggtctattagat 4084275  T
Q  130 atataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggcgagaaattttcaaatggtgtgaattgattcattctagagaaat- 228  Q
    ||| ||||||||||||   ||||||||||||||||||||||||||| ||||  || |||||||||||||||||||||||| ||||||||| ||||||||     
T  4084274 atacaatgacttctgc---cgatgttcctgcttattcggtctcaaaggattcaggagagaaattttcaaatggtgtgaatggattcattccagagaaatg 4084178  T
Q  229 ------------aattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgat 314  Q
                | ||||||||| || |||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4084177 atcctacttaccagttggtttggcttgttagctttactatggtttgttgcttatttataacttattttttatggtgaatttgttgcttaattattgat 4084080  T

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Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 36 - 314
Target Start/End: Complemental strand, 44312489 - 44312207
Alignment:
Q  36 aaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataa 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||  |||||||||||||||||| ||||||||||||||||||||||    
T  44312489 aaggaagttgatgaagctcatgctggagaaattgtttttgtgtttggtgctattcttagatctggagatacttttactgatgggtctgttagatatataa 44312390  T
Q  136 tgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggcgagaaattttcaaatggtgtgaattgattcattctagagaaat------- 228  Q
    ||||||   ||||||||||||        || |||||||||| || ||| |||||||||||||||||||||||| ||||||||| |||||| |           
T  44312389 tgactt---ctgccgatgttc--------tccgtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatccta 44312301  T
Q  229 -------aattggtttggtttattagctttgcaatggtttgtttcttatttataactta-ttttttatggtgaatctgttgcttaattattgat 314  Q
           | ||||||||| || ||| || |||  ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  44312300 cttcgccagttggtttggcttgttaactatgctttggtttgttgcttatttataacttatttttttatggtgaatttgttgcttaattattgat 44312207  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 42 - 314
Target Start/End: Complemental strand, 44301596 - 44301308
Alignment:
Q  42 gttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgactt 141  Q
    ||||||||||||||||| |||||||||||| ||||||| | |  |  |||| ||||||||||||||||||| ||||||||||||||||||| |||| |||    
T  44301596 gttgatgaagctcatgccggagaaattgttattgtgttagctattgttcttaaatctggagatacttttactgatgggtctgttagatatacaatgtctt 44301497  T
Q  142 ctgctgccgatgttcctgcttattcggtctcaaaagattgtggcgagaaattttcaaatggtgtgaattgattc-----attctagagaaat-------- 228  Q
    ||||   |||||||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||     |||| || |||||            
T  44301496 ctgc---cgatgttcctacttattcggtgtcaaaagattctggagagaaattttcaaatggtgtgaattgattcattccattccagtgaaatgatcctac 44301400  T
Q  229 ------aattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgat 314  Q
          | || |||||| || |||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  44301399 ttacccagtttgtttggcttgttagctttgctatgttttgttgcttatttataacttattttttatggtaaatctgctgcttaattattgat 44301308  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 43896255 - 43896073
Alignment:
Q  37 aggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataat 136  Q
    |||||||||||||||||||||||||||| ||| || ||||||| ||||||  |||| |||||||||||||||| || ||||||||||||||||||| |||    
T  43896255 aggaagttgatgaagctcatgctggagagattattattgtgttagatgctattcttaaatctggagatactttcactgatgggtctgttagatatacaat 43896156  T
Q  137 gacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggcgagaaattttcaaatggtgtgaattgattcattctag 222  Q
    |||||   ||||||||||||||| ||||||  ||||| |||||| ||| ||||||||||||||||||||| || ||||||||||||    
T  43896155 gactt---ctgccgatgttcctgattattctatctcataagattctggagagaaattttcaaatggtgtggatggattcattctag 43896073  T

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Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 44306704 - 44306520
Alignment:
Q  42 gttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgactt 141  Q
    |||||||||||||||||||||||||||||| |  |||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  44306704 gttgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatacttttactgatgggtctgttagatatacaatgactt 44306605  T
Q  142 ctgctgccgatgttcctgcttattcggtctcaaaagattgtggcgaga-aattttcaaatggtgtgaattgattcattctagagaaat 228  Q
       |||||||||||||| ||||||| |||||| |||||| ||| ||||   |||||||||||||||||| |||||||||||| |||||    
T  44306604 ---ctgccgatgttcctacttattctgtctcataagattctggagagagttttttcaaatggtgtgaatggattcattctagggaaat 44306520  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 317 - 408
Target Start/End: Complemental strand, 44312172 - 44312081
Alignment:
Q  317 tgtgttctgcatttaacacttgatcctatctctgctgtcaatattatctatttgattcttaagtttaacatttagtgtaaatgtcatgttaa 408  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44312172 tgtgttctgcatttaacagttgatcctatctctgctgtcaagattatctatttgattcttaagtttaacatttagtgcaaatgtcatgttaa 44312081  T

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Target: chr8; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 317 - 418
Target Start/End: Complemental strand, 43895890 - 43895789
Alignment:
Q  317 tgtgttctgcatttaacacttgatcctatctctgctgtcaatattatctatttgattcttaagtttaacatttagtgtaaatgtcatgttaagacttgat 416  Q
    ||||||||||||||||||| ||||||||||||||| ||||| ||| ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  43895890 tgtgttctgcatttaacacctgatcctatctctgccgtcaagattgtctatgtgattcataagtttaacatttagtgcaaatgtcatgttaagacttgat 43895791  T
Q  417 cc 418  Q
    ||    
T  43895790 cc 43895789  T

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Target: chr8; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 44306313 - 44306213
Alignment:
Q  320 gttctgcatttaacacttgatcctatctct--gctgtcaatattatctatttgattcttaagtttaacatttagtgtaaatgtcatgttaagacttgatc 417  Q
    ||||||||||||||||||||||||||||||  |||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44306313 gttctgcatttaacacttgatcctatctctctgctgtcaagattgtctatgtgattcttaagtttaacatttagtgcaaatgtcatgttaagacttgatc 44306214  T
Q  418 c 418  Q
    |    
T  44306213 c 44306213  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 43895705 - 43895619
Alignment:
Q  58 ctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctg 144  Q
    ||||| ||||||||  |||||||| |||| |   ||||||||||||||||||| | ||||||||||||||||||  |||||| ||||    
T  43895705 ctggacaaattgttgctgtgtttggtgctgagtgtgaatctggagatacttttgctgatgggtctgttagatattcaatgacctctg 43895619  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 44301230 - 44301178
Alignment:
Q  376 taagtttaacatttagtgtaaatgtcatgttaagacttgatccttcatactgat 429  Q
    |||||||||||||||||| |||||||||| ||||| |||||||| |||||||||    
T  44301230 taagtttaacatttagtgcaaatgtcatg-taagatttgatcctccatactgat 44301178  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 399
Target Start/End: Complemental strand, 44305785 - 44305709
Alignment:
Q  322 tctgcatttaacacttgatcctatctctgctgtcaatattatctatttgattcttaagtttaacatttagtgtaaatg 399  Q
    ||||||||||||| ||||||| |||||||||||||| | ||||||| ||||||  |||||| ||  ||||||||||||    
T  44305785 tctgcatttaacaattgatcccatctctgctgtcaagaatatctatgtgattc-aaagtttgacggttagtgtaaatg 44305709  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 44301271 - 44301233
Alignment:
Q  319 tgttctgcatttaacacttgatcctatctctgctgtcaa 357  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  44301271 tgttctgcatttaatacttgatcctatctatgctgtcaa 44301233  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 44306129 - 44306043
Alignment:
Q  58 ctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctg 144  Q
    ||||| ||||||||  |||||||| |||| |   ||||||||||||||||||| | |||||||| |||||||||  |||||| ||||    
T  44306129 ctggacaaattgttgctgtgtttggtgctgagtgtgaatctggagatacttttgctgatgggtccgttagatattcaatgacctctg 44306043  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 43895361 - 43895316
Alignment:
Q  322 tctgcatttaacacttgatcctatctctgctgtcaatattatctat 367  Q
    ||||||||||||| ||||| |||||||||||||||| | |||||||    
T  43895361 tctgcatttaacaattgatactatctctgctgtcaagaatatctat 43895316  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 214
Target Start/End: Original strand, 35856845 - 35857017
Alignment:
Q  39 gaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatga 138  Q
    |||||| |||| |||||||||||| |||||||| |||| | ||||| | ||  || | | ||||| || ||||| ||||||||||||||||     ||||    
T  35856845 gaagttaatgaggctcatgctggacaaattgttgttgtatgtgatgttgattgtgcaccaggagaaacatttactgatgggtctgttagatgggctatga 35856944  T
Q  139 cttctgctgccgatgttcctgcttattcggtctcaaaagattgtggcgagaaattttcaaatggtgtgaattgatt 214  Q
    |||||||   | |||||| || |||||||||||||||||||| | ||||| ||| |||||||| ||||||| ||||    
T  35856945 cttctgc---caatgttcttgattattcggtctcaaaagattctagcgagcaatcttcaaatgttgtgaatggatt 35857017  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 15040348 - 15040305
Alignment:
Q  99 ggagatacttttaccgatgggtctgttagatatataatgacttc 142  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||    
T  15040348 ggagatacttttactgatgggtctgttaaatatacaatgacttc 15040305  T

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