View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_317 (Length: 232)

Name: NF10049A_low_317
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_317
NF10049A_low_317
[»] chr6 (1 HSPs)
chr6 (1-227)||(10783123-10783349)
[»] chr8 (2 HSPs)
chr8 (3-224)||(23438864-23439085)
chr8 (3-224)||(23438295-23438519)
[»] chr2 (2 HSPs)
chr2 (3-224)||(8674229-8674450)
chr2 (3-224)||(8673806-8674027)
[»] chr1 (2 HSPs)
chr1 (3-222)||(50508102-50508321)
chr1 (116-222)||(50475734-50475840)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10783123 - 10783349
Alignment:
Q  1 acatagatttacctcttcttttctcactttccatgaaggcccttccnnnnnnnggatttccctggcgtctaccattgcatatgctggcatacgtgcctgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||    
T  10783123 acatagatttacctcttcttttctcactttccatgaaggcccttccttttcttggatttccctggcgtctaccattgcatctgctggcatacgtgcctgt 10783222  T
Q  101 cttgtatcgtctgcttgatcaaatgccgaacattgaactccaatgacagcctcaagattgtcttctttgatacttgaggttccacttgcaggcctttggc 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10783223 cttgtatcgtctgcttgatcaaatgccgaacgttgaactccaatgacagcctcaagattgtcttctttgatacttgaggttccacttgcaggcctttggc 10783322  T
Q  201 ccatagaatcaactagcttttcaagtt 227  Q
    ||||| |||||||||||||||||||||    
T  10783323 ccataaaatcaactagcttttcaagtt 10783349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 23438864 - 23439085
Alignment:
Q  3 atagatttacctcttcttttctcactttccatgaaggcccttccnnnnnnnggatttccctggcgtctaccattgcatatgctggcatacgtgcctgtct 102  Q
    ||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23438864 atagatttacctcttcttttctcactttccatgcaggcccttccatttcttggatttccctggcgtctaccattgcatctgctggcatacgtgcctgtct 23438963  T
Q  103 tgtatcgtctgcttgatcaaatgccgaacattgaactccaatgacagcctcaagattgtcttctttgatacttgaggttccacttgcaggcctttggccc 202  Q
    | |||| || ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||| |||    
T  23438964 tctatcatccgcttgatcaaatgccaaacgttgaactccaatgacagcctcaagactgtcttctttgatacttgaggttttacttgcaggcctttgtccc 23439063  T
Q  203 atagaatcaactagcttttcaa 224  Q
    ||||||||||||||||||||||    
T  23439064 atagaatcaactagcttttcaa 23439085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 23438519 - 23438295
Alignment:
Q  3 atagatttacctcttcttttctcactttccatgaaggcccttccnnnnnnnggatttccctggcgtctaccattgcatatgctggcatacgtgcctgtct 102  Q
    ||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  23438519 atagatttacctcttcttttctcactttccatgaaggccgttccatttcttggatttccctggcgtctaccactgcatctggtggcatacgtgcctgtct 23438420  T
Q  103 tgtatcgtctgcttgatcaaatgccgaacattgaactccaatgacagcctcaaga----ttgtcttctttgatacttgaggttccacttgcaggcctttg 198  Q
    ||||   || |||||||||||||||| || |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  23438419 tgtacattcggcttgatcaaatgccg-acgttgaactccaatgacagcctcaagactgtctgtcttctttgatacttgaggttccacttgcaggcctttg 23438321  T
Q  199 gcccatagaatcaactagcttttcaa 224  Q
     |||||||||||||||||||||||||    
T  23438320 tcccatagaatcaactagcttttcaa 23438295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 8674229 - 8674450
Alignment:
Q  3 atagatttacctcttcttttctcactttccatgaaggcccttccnnnnnnnggatttccctggcgtctaccattgcatatgctggcatacgtgcctgtct 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||| |||||||||||||| ||||||    
T  8674229 atagatttacctcttcttttctcactttccatgaaggcccttccatttctttgatttccctggtgtctaccattgcatctgctggcatacgtgtctgtct 8674328  T
Q  103 tgtatcgtctgcttgatcaaatgccgaacattgaactccaatgacagcctcaagattgtcttctttgatacttgaggttccacttgcaggcctttggccc 202  Q
    |||||| || ||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  8674329 tgtatcatccgcttgattaaatgccgaacgttgaactctaatgacagcctcaagactgtcttctttgatacttgaggttccacttgcaggcctttgtccc 8674428  T
Q  203 atagaatcaactagcttttcaa 224  Q
    ||||||||||||||||||||||    
T  8674429 atagaatcaactagcttttcaa 8674450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 8674027 - 8673806
Alignment:
Q  3 atagatttacctcttcttttctcactttccatgaaggcccttccnnnnnnnggatttccctggcgtctaccattgcatatgctggcatacgtgcctgtct 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||       |||||||||| |||||||||||||||| |||||||||| ||||||||||    
T  8674027 atagatttacctcttcttttctcactttctatgaaggcccttccatttcttggatttccctagcgtctaccattgcatctgctggcatatgtgcctgtct 8673928  T
Q  103 tgtatcgtctgcttgatcaaatgccgaacattgaactccaatgacagcctcaagattgtcttctttgatacttgaggttccacttgcaggcctttggccc 202  Q
    |||||| || ||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||  ||    
T  8673927 tgtatcatccgcttgatcaaatgtcgaacgttgaactccaatgacagcctcaagactgtcttctttgatacttgaggttccacttgcaggtctttgtgcc 8673828  T
Q  203 atagaatcaactagcttttcaa 224  Q
    |||||| ||||| |||||||||    
T  8673827 atagaaccaacttgcttttcaa 8673806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 50508321 - 50508102
Alignment:
Q  3 atagatttacctcttcttttctcactttccatgaaggcccttccnnnnnnnggatttccctggcgtctaccattgcatatgctggcatacgtgcctgtct 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  50508321 atagatttacctcatcttttctcactttccatgaaggcccttccatttcttggatttccctggcgtctaccattgcatctgctggcatacgtgcatgtct 50508222  T
Q  103 tgtatcgtctgcttgatcaaatgccgaacattgaactccaatgacagcctcaagattgtcttctttgatacttgaggttccacttgcaggcctttggccc 202  Q
    | ||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |     
T  50508221 tatatcgtctgcttgatcaaatgtcgaacgttgaactccaatgacagcctcaggattgtcttctttgatacttgaggtcccacttgcaggcctttggtcg 50508122  T
Q  203 atagaatcaactagcttttc 222  Q
    |||| |||||||||||||||    
T  50508121 atagtatcaactagcttttc 50508102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 50475840 - 50475734
Alignment:
Q  116 tgatcaaatgccgaacattgaactccaatgacagcctcaagattgtcttctttgatacttgaggttccacttgcaggcctttggcccatagaatcaacta 215  Q
    |||||| ||||| ||  ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || |||||||||     
T  50475840 tgatcatatgccaaatgttgaacttcaatgacagcctcaggattgtcttctttgatacttgaggttccacttgcaggcctttggtcaatggaatcaactg 50475741  T
Q  216 gcttttc 222  Q
    |||||||    
T  50475740 gcttttc 50475734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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