View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_326 (Length: 230)
Name: NF10049A_low_326
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_326 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 3436 - 3263
Alignment:
| Q |
1 |
tgcatatttcttttccttttcactcctctgtttcaaatcctctgtttcaaacagaacactgaaaccttaacaaaaacaaaacatgtctacctccnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3436 |
tgcatatttcttttccttttcactcctctgtttcaaatcctctgtttcaaacagaacactgaaaccttaacaaaaacaaaacatgtctacctccaaaaaa |
3337 |
T |
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| Q |
101 |
nnnctaaccttaaacactgtctccataaaccttggttgtggaacatgtacaagaccaaaatttggtttcatatt |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3336 |
aaactaaccttaaacactgtctccataaaccttggttgtggaacatgtacaagaccaaaacttggtttcatatt |
3263 |
T |
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