View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_328 (Length: 230)
Name: NF10049A_low_328
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_328 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43239059 - 43238834
Alignment:
| Q |
1 |
acataaaagttaaaacataatttaactgagaata-gagtaatatacctttgtcaatagtatgagcagtggaaagatcataagaatcatttgagatattct |
99 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43239059 |
acataaaagttaaaacataatttagctgagaataagagtaatatacctttgtcaatagtatgagcagtggaaaggtcataagaatcatttgagatattct |
43238960 |
T |
|
| Q |
100 |
tgtcttcttgaccatgttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttcca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43238959 |
tgtcttcttgaccatgttctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttcca |
43238860 |
T |
|
| Q |
200 |
aaaacgcaaga-tttggtacacatat |
224 |
Q |
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||||||||||| |||||||||||||| |
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| T |
43238859 |
aaaacgcaagagtttggtacacatat |
43238834 |
T |
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