View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_329 (Length: 230)
Name: NF10049A_low_329
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_329 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9329221 - 9329444
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9329221 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagacccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag |
9329320 |
T |
|
| Q |
101 |
gatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9329321 |
gatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatt |
9329420 |
T |
|
| Q |
201 |
tttgaggtgaaggttagtgaagtt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
9329421 |
tttgaggtgaaggttagtgaagtt |
9329444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 9283698 - 9283487
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag |
100 |
Q |
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||||| ||| |||||| | |||| || | ||||||||| |||||||| ||||||||| || |||||||| |||||| |||| | ||||||||| |||||| |
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| T |
9283698 |
aaagcaattgggccattgtagatggcgaggaggccgttacatgaaccaataagagccttgatgctgttaagcgtgaaaggatcgatgttggtggtgaaag |
9283599 |
T |
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| Q |
101 |
gatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatt |
200 |
Q |
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| T |
9283598 |
gatggttgagcggtattatggatttggttaggttagggaaatcgagttggtagagattggtcttgtgacggaggatgagtttgaagttgaggga---act |
9283502 |
T |
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| Q |
201 |
tttgaggtgaaggtt |
215 |
Q |
| |
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||||||||||||||| |
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| T |
9283501 |
tttgaggtgaaggtt |
9283487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 9275150 - 9275368
Alignment:
| Q |
8 |
tttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaatg----ttggtgctgaaaggat |
103 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| || | || || ||| | |||||||||| |
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| T |
9275150 |
tttggccattggagatagcaatgaggccgttacatgaacctataagagccatggtgctgttacgcgtgaaagaatcattgttgcttgctactgaaaggat |
9275249 |
T |
|
| Q |
104 |
ggttgagtggaatcatggatttggttagattaggaagatcgagttggtagag-atcggtattgagctgaaggatgaggttgaaattgagggaattatttt |
202 |
Q |
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| T |
9275250 |
ggttgagttgtattatgaatttggttaggttagggaaattgagttcgtagagtttgggtgttgtgttgaagaatgaggttgaaattgaggga---atttt |
9275346 |
T |
|
| Q |
203 |
tgaggtgaaggttagtgaagtt |
224 |
Q |
| |
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|||| |||||||| ||||||| |
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| T |
9275347 |
tgagatgaaggttgatgaagtt |
9275368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9316650 - 9316870
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag |
100 |
Q |
| |
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||||||||||| |||| ||| || || | |||||||| |||||||||| ||||||||| |||||||| |||||||||||| ||||| |||| |
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| T |
9316650 |
aaagcgatttgaccattggaaatggcgagaaggccgttacatgaaccgagaagagccattatgctgttatacgtgacaggagctgtgttg------aaag |
9316743 |
T |
|
| Q |
101 |
gatggttgagtggaatcatggatttggttagattagg---aagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaatt |
197 |
Q |
| |
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||||||||||||||||||||||||| ||||| | ||| | ||||| ||||||||| |||| ||| |||||||| | | |||||||||||| |
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| T |
9316744 |
gatggttgagtggaatcatggatttcgttaggtcagggaaatcatcgatttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaatt |
9316843 |
T |
|
| Q |
198 |
atttttgaggtgaaggttagtgaagtt |
224 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
9316844 |
atttttgaggtgaaggttgatgaagtt |
9316870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 9321606 - 9321722
Alignment:
| Q |
9 |
ttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctg------ttacgcgtgacaggagcaatgttggtgctgaaagga |
102 |
Q |
| |
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|||||| | |||||| || | ||||||||| || |||||||||||||||||| | ||| ||||| |||||||||| || |||||| |||||||| |
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| T |
9321606 |
ttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgattttggtggtgaaagga |
9321705 |
T |
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| Q |
103 |
tggttgagtggaatcat |
119 |
Q |
| |
|
||||||||||||||||| |
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| T |
9321706 |
tggttgagtggaatcat |
9321722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7115160 - 7115101
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatg |
60 |
Q |
| |
|
|||||||||||||||| |||||| || | ||||||||| ||||||||||||||| ||||| |
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| T |
7115160 |
aaagcgatttggccattggagatggcgaggaggccgttacatgaaccgataagatccatg |
7115101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9357802 - 9357880
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgt---tgctgttacgcgtga |
76 |
Q |
| |
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|||||||||| ||||| |||||| || | ||||||||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
9357802 |
aaagcgatttcgccattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtgctgttacgcgtga |
9357880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 10348509 - 10348585
Alignment:
| Q |
85 |
atgttggtgctgaaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggt |
161 |
Q |
| |
|
|||||||| |||| |||| |||||||||||| || ||||||||||| ||||| | || ||||||||||| |||||| |
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| T |
10348509 |
atgttggtagtgaagggatagttgagtggaatgatagatttggttaggttagggaaatggagttggtagaaatcggt |
10348585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 9060440 - 9060402
Alignment:
| Q |
186 |
attgagggaattatttttgaggtgaaggttagtgaagtt |
224 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||||| |
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| T |
9060440 |
attgaggggattatttttgaggtaaaggttagtgaagtt |
9060402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 37463120 - 37463191
Alignment:
| Q |
1 |
aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgc |
72 |
Q |
| |
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|||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||| |||||| |||| |
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| T |
37463120 |
aaagcgatttggccattggagatagcgaggaggccgttacatgaaccgataagagccatggtgctgtcacgc |
37463191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 561966 - 562015
Alignment:
| Q |
172 |
aggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagtt |
224 |
Q |
| |
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||||||||||| ||||||||||| || |||||||||||||||||||||||| |
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|
| T |
561966 |
aggatgaggttaaaattgagggagtt---tttgaggtgaaggttagtgaagtt |
562015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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