View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_33 (Length: 423)

Name: NF10049A_low_33
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_33
NF10049A_low_33
[»] chr3 (21 HSPs)
chr3 (12-238)||(9101182-9101408)
chr3 (12-237)||(9029068-9029294)
chr3 (12-238)||(8746908-8747134)
chr3 (16-238)||(9023404-9023626)
chr3 (12-238)||(9026108-9026334)
chr3 (12-238)||(9034574-9034800)
chr3 (12-187)||(9015428-9015602)
chr3 (44-174)||(9108812-9108942)
chr3 (50-195)||(8957118-8957263)
chr3 (60-196)||(8965272-8965408)
chr3 (60-190)||(8962563-8962693)
chr3 (14-190)||(9019290-9019466)
chr3 (50-192)||(8755581-8755723)
chr3 (54-181)||(9112118-9112245)
chr3 (60-197)||(8988340-8988477)
chr3 (335-381)||(9101045-9101091)
chr3 (378-417)||(9100959-9100998)
chr3 (341-380)||(9025981-9026020)
chr3 (341-380)||(9034446-9034485)
chr3 (341-380)||(9023277-9023316)
chr3 (335-379)||(8746795-8746839)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 9101408 - 9101182
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101408 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 9101309  T
Q  112 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 211  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101308 ttgtaacagaaccagcagctccagcatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 9101209  T
Q  212 cataaagaaggggaagaacttcatagc 238  Q
    |||||||||||||||||||||||||||    
T  9101208 cataaagaaggggaagaacttcatagc 9101182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 9029294 - 9029068
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatc-atcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaa 110  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  9029294 atgaaatccacaagaaaataagtggaatccatcatgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaa 9029195  T
Q  111 cttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatga 210  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  9029194 cttgtaatagatccagcagctccagcatcaggacctggtgctggagccaacgaaggactaaggtcttgggcagaggccacggtggcggcgaagatgatga 9029095  T
Q  211 ccataaagaaggggaagaacttcatag 237  Q
    ||| |||||||| ||||||||||||||    
T  9029094 ccaaaaagaaggagaagaacttcatag 9029068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 8747134 - 8746908
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 111  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||     
T  8747134 atgaaatccacaagaaaatgagtggaatcatcatttttttagtgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaat 8747035  T
Q  112 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 211  Q
    |||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||    
T  8747034 ttgtaacagatccaacagctccaacatcaggacctggtgctggagccaacgagggactgaggtcttgggcagaggccagggtggcggcgaagatgaagac 8746935  T
Q  212 cataaagaaggggaagaacttcatagc 238  Q
     | |||||||| |||||||||||||||    
T  8746934 gaaaaagaaggagaagaacttcatagc 8746908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 9023626 - 9023404
Alignment:
Q  16 aatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgt 115  Q
    ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||  |||| ||||| ||||||||||||||||||    
T  9023626 aatccacaagaaaatgagtggaatcatcatgtttttagtgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgt 9023527  T
Q  116 aacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgaccata 215  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| |    
T  9023526 aacagatccagcagctccagcatcaggacctggtgccggagccaacgagggactaaggtcttgggcagaggccactgtggcggcgaagatgatgaccaaa 9023427  T
Q  216 aagaaggggaagaacttcatagc 238  Q
    ||||||| ||||||||| |||||    
T  9023426 aagaaggagaagaactttatagc 9023404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 9026334 - 9026108
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 111  Q
    |||||||||||||||||||||||| |||||| |||||||||||| || |||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  9026334 atgaaatccacaagaaaataagtggaatcattatgtttttagtgtttgaagatggcgatcattgacaatacaactgaaactccgatcattgccactgaac 9026235  T
Q  112 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 211  Q
    ||||||||||||||||| |||||| |||||  |||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||    
T  9026234 ttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggactaagatcttgggcagaggccacggtggcggcgaagatgatgac 9026135  T
Q  212 cataaagaaggggaagaacttcatagc 238  Q
    || |||||||| |||||||||||||||    
T  9026134 caaaaagaaggagaagaacttcatagc 9026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 9034800 - 9034574
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 111  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  9034800 atgaagtccacaagaaaataagtgaaatcatcatgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaac 9034701  T
Q  112 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccacggtggcggcgaagatgatgac 211  Q
    ||| |||||||||||||||||||| |||||| |||||||| ||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||  |||    
T  9034700 ttgcaacagatccagcagctccagcatcaggacctggtgccggagccaacgaaggactaaggtcttgggcagaggccacgatggcagcgaagatggcgac 9034601  T
Q  212 cataaagaaggggaagaacttcatagc 238  Q
     | |||||||| |||||| || |||||    
T  9034600 gaaaaagaaggagaagaattttatagc 9034574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 9015602 - 9015428
Alignment:
Q  12 atgaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaac 111  Q
    |||||||||||||||||||||||| |||||| || ||||||||| || ||||||||||||||||||||||||||||||||||| | ||||| |||||||     
T  9015602 atgaaatccacaagaaaataagtggaatcataat-tttttagtgtttgaagatggcgagcattgacaatacaattgaaactccaaccatagtcactgaat 9015504  T
Q  112 ttgtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggc 187  Q
    |||||||| ||||||| ||||| | |||||| |||||||| |||| ||||||||| ||||||| ||| || |||||    
T  9015503 ttgtaacatatccagctgctccggcatcaggacctggtgccggagacaacgaggggctgaggtcttgagccgaggc 9015428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 9108942 - 9108812
Alignment:
Q  44 atgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcaggg 143  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||   ||||||     
T  9108942 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcagga 9108843  T
Q  144 cctggtgctggagccaacgagggactgaggt 174  Q
    |||| |||||||||||| |||||||||||||    
T  9108842 cctgatgctggagccaatgagggactgaggt 9108812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 8957263 - 8957118
Alignment:
Q  50 ttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggt 149  Q
    ||||| ||| || ||||||| ||||||||  ||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||  ||||| || |||    
T  8957263 ttagttcttgaaaatggcgaccattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggt 8957164  T
Q  150 gctggagccaacgagggactgaggttttgggcagaggccacggtgg 195  Q
    |||||||| ||||| ||||| |||| |||||| |||||||||||||    
T  8957163 gctggagctaacgacggactaaggtcttgggccgaggccacggtgg 8957118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 8965408 - 8965272
Alignment:
Q  60 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 159  Q
    ||||| |||||||||||||  ||||||||| |||||||||| ||||  ||||||||||||||||| ||||||||||  ||||| | ||||||||||||||    
T  8965408 aagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggtgctggagcca 8965309  T
Q  160 acgagggactgaggttttgggcagaggccacggtggc 196  Q
    |||| ||||| |||| |||||| |||||||| |||||    
T  8965308 acgacggactaaggtcttgggccgaggccactgtggc 8965272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 8962693 - 8962563
Alignment:
Q  60 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 159  Q
    ||||| ||||||||||| |  ||||||||| |||||||||||||||| |||| || ||||||||| ||| |||||| |||||| |||||||||||||| |    
T  8962693 aagatagcgagcattgaaagcacaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggtgctggagcta 8962594  T
Q  160 acgagggactgaggttttgggcagaggccac 190  Q
    |||||||||| |||| |||||| ||||||||    
T  8962593 acgagggactaaggtcttgggccgaggccac 8962563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 9019466 - 9019290
Alignment:
Q  14 gaaatccacaagaaaataagtgcaatcatcatgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaactt 113  Q
    ||||||||| ||||||| ||||   |||| ||||||| ||| ||| |||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||     
T  9019466 gaaatccaccagaaaattagtgggttcatgatgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactc 9019367  T
Q  114 gtaacagatccagcagctccaggatcagggcctggtgctggagccaacgagggactgaggttttgggcagaggccac 190  Q
    ||||||||||||  ||| |||  |||||| |||||||| |||||  | |||||||| |||| ||| || ||||||||    
T  9019366 gtaacagatccacaagccccaacatcaggacctggtgccggagcggatgagggactaaggtcttgagccgaggccac 9019290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 8755723 - 8755581
Alignment:
Q  50 ttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggt 149  Q
    ||||| ||| |||||||||||||| ||||| | ||| ||| |||| |||||||| |||||| ||||||||||||||||||| || | ||||||  |||||    
T  8755723 ttagttcttgaagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggt 8755624  T
Q  150 gctggagccaacgagggactgaggttttgggcagaggccacgg 192  Q
    || |||||||||||||||||||||| ||| || || |||||||    
T  8755623 gccggagccaacgagggactgaggtcttgagccgaagccacgg 8755581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 9112245 - 9112118
Alignment:
Q  54 tgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctg 153  Q
    ||||||||||| || ||||||||||| |||||  || |||| ||||||||||||| | |||||| ||||||| ||||||| | ||||||  ||||||| |    
T  9112245 tgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccg 9112146  T
Q  154 gagccaacgagggactgaggttttgggc 181  Q
    ||||||||||||||||||||| ||||||    
T  9112145 gagccaacgagggactgaggtcttgggc 9112118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 8988477 - 8988340
Alignment:
Q  60 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagatccagcagctccaggatcagggcctggtgctggagcca 159  Q
    ||||| ||||||||||||| ||| |||||| ||||||||||||||||  |||||||| |||| |  |||||||||   ||||| ||||||||||||| ||    
T  8988477 aagatagcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggtgctggagaca 8988378  T
Q  160 acgagggactgaggttttgggcagaggccacggtggcg 197  Q
    |||||||||| |||| |||||| ||||| |||| ||||    
T  8988377 acgagggactaaggtcttgggccgaggctacggcggcg 8988340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 9101091 - 9101045
Alignment:
Q  335 gtgggagatatgagaattgagagggtgtgggagtatttataagggag 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9101091 gtgggagatatgagaattgagagggtgtgggagtatttataagggag 9101045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 9100998 - 9100959
Alignment:
Q  378 ggagcttgtgaaaatatattatgaatgatttggtcgttag 417  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9100998 ggagcttgtgaaaatatattatgaatgatttggtcgttag 9100959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 9026020 - 9025981
Alignment:
Q  341 gatatgagaattgagagggtgtgggagtatttataaggga 380  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  9026020 gatatgagaattgagagggtgtgagagtatttataaggga 9025981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 9034485 - 9034446
Alignment:
Q  341 gatatgagaattgagagggtgtgggagtatttataaggga 380  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  9034485 gatatgagaattgagagggtgtgagagtatttataaggga 9034446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 9023316 - 9023277
Alignment:
Q  341 gatatgagaattgagagggtgtgggagtatttataaggga 380  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  9023316 gatatgagaattgagagggtgtgaaagtatttataaggga 9023277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 8746839 - 8746795
Alignment:
Q  335 gtgggagatatgagaattgagagggtgtgggagtatttataaggg 379  Q
    ||||| ||||||||||||||||| || ||| ||||||||||||||    
T  8746839 gtgggtgatatgagaattgagagagtttggaagtatttataaggg 8746795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University