View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_332 (Length: 230)
Name: NF10049A_low_332
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_332 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 5474708 - 5474509
Alignment:
| Q |
29 |
ttgtgtttcttacaatggaggatctaaacagttttgaaaataaagtgacataaactttcactgaacaccttgtatgagaaaatgttttttctttgaattg |
128 |
Q |
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| T |
5474708 |
ttgtgtttcttacaatggaggatctaaacagttttgaaaataaagtgaca--aactttcactaaacaccttgtatgagagaatgttttttctttgaattg |
5474611 |
T |
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| Q |
129 |
tatcctcttttttatatgctttcccgtatcattatcaccgtgagaaattttcctttccggtacttattctacttcaatttcatcctcgttcctccatttc |
228 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5474610 |
tatcctgttttttatatgctttcccgtatccttatcaccgtgagaaattttccattacggtacttattctacttcaatttcatcctcgttcctccatttc |
5474511 |
T |
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