View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_336 (Length: 230)
Name: NF10049A_low_336
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_336 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4123946 - 4123722
Alignment:
| Q |
1 |
tatcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaat |
100 |
Q |
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| T |
4123946 |
tatcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaat |
4123847 |
T |
|
| Q |
101 |
tcattggagaactggtccatggaatggattggtttttctcggaacaccgagtatgttaaccaagtatttacacggttggcattttgttcaagacaatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123846 |
tcattggagaactggtccatggaatggattggtttttctcggaacaccgagtatgttaaccaagtatttacacggttggcattttgttcaagacaatgat |
4123747 |
T |
|
| Q |
201 |
ggaactacttatattacttacaatt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
4123746 |
ggaactacttatattacttacaatt |
4123722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4153296 - 4153072
Alignment:
| Q |
1 |
tatcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || || |
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| T |
4153296 |
tatcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggaaagataaaaatat |
4153197 |
T |
|
| Q |
101 |
tcattggagaactggtccatggaatggattggtttttctcggaacaccgagtatgttaaccaagtatttacacggttggcattttgttcaagacaatgat |
200 |
Q |
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| T |
4153196 |
tcattggagaacaggtccatggaatggaagggtttttctcggatcaccgagaatgttaaccgagtatttagccggttggcgttttgatcaagacactgat |
4153097 |
T |
|
| Q |
201 |
ggaactacttatattacttacaatt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
4153096 |
ggaactacttatattacttacaatt |
4153072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 4163649 - 4163438
Alignment:
| Q |
1 |
tatcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaat |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
4163649 |
tatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataagagaat |
4163550 |
T |
|
| Q |
101 |
tcattggagaactggtccatggaatggattggtttttctcggaacaccgagtatgttaaccaagtatttacacggttggcattttgttcaagacaatgat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| |||||||| ||||| ||||||||| ||| |
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| T |
4163549 |
tcattggagaactggtccatggaatggaacggtttttctcggatcaccgagaatgttaaccgagtatttagccggttggcgttttgatcaagacaaagat |
4163450 |
T |
|
| Q |
201 |
ggaactacttat |
212 |
Q |
| |
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|||||||||||| |
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| T |
4163449 |
ggaactacttat |
4163438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 4134488 - 4134347
Alignment:
| Q |
4 |
caagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaattca |
103 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| | || |||| ||||||||||||||| ||||||||||||||||||| | ||||| |||||| | |
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| T |
4134488 |
caagaaaaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagattggatgtaccagaagttttcatttggaaagataaaaaaattta |
4134389 |
T |
|
| Q |
104 |
ttggagaactggtccatggaatggattggtttttctcggaac |
145 |
Q |
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| T |
4134388 |
ttggagaactggtccatggaatggaagggtttttctcggaac |
4134347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 4145290 - 4145149
Alignment:
| Q |
4 |
caagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaattca |
103 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| | || |||| ||||||||||||||| ||||||||||||||||||| | ||||| |||||| | |
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| T |
4145290 |
caagaaaaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagattggatgtaccagaagttttcatttggaaagataaaaaaattta |
4145191 |
T |
|
| Q |
104 |
ttggagaactggtccatggaatggattggtttttctcggaac |
145 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
4145190 |
ttggagaactggtccatggaatggaagagtttttctcggaac |
4145149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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