View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_34 (Length: 423)

Name: NF10049A_low_34
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_34
NF10049A_low_34
[»] chr3 (5 HSPs)
chr3 (257-417)||(33399827-33399989)
chr3 (64-223)||(32493567-32493717)
chr3 (53-150)||(33399698-33399795)
chr3 (232-300)||(32492827-32492895)
chr3 (350-417)||(32492759-32492828)
[»] chr5 (1 HSPs)
chr5 (22-59)||(20287476-20287513)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 8e-71; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 257 - 417
Target Start/End: Original strand, 33399827 - 33399989
Alignment:
Q  257 aggacagctgattccttccttttgaggtgctataaattgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaga 356  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  33399827 aggacagctgattccttccttttgaggtgctataacttgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaat 33399926  T
Q  357 gtggcttcttttcgttgtagtcttcacataaattcttgaaga--atagaaatgaatctcttca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  33399927 gtggcttcttttcgttgtagtcttcacataaattcttgaagatcatagaaatgaatcttttca 33399989  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 32493717 - 32493567
Alignment:
Q  64 gccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccataaattctttcacat 163  Q
    |||||||||||||||||||||||| |||||||||||         |||||||||||||||| |||| ||||||||||||||||||||||||||||| |||    
T  32493717 gccgaaagcgccattattgagatgttgcatttggtg---------ggattagtttccactacctaagtttcgggcaaatcttccataaattctttctcat 32493627  T
Q  164 tcttcctataatttgttgctaatttttgacttgtttgcctaaaatgccttgcagcttgat 223  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32493626 tcttcctataatttggtgctaatttttgacttgtttgcctaaaatgccttgcagcttgat 32493567  T

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Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 33399698 - 33399795
Alignment:
Q  53 aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399698 aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata 33399795  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 32492895 - 32492827
Alignment:
Q  232 tggacacaatgctcccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa 300  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32492895 tggacgcaatgcccccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa 32492827  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 350 - 417
Target Start/End: Complemental strand, 32492828 - 32492759
Alignment:
Q  350 aacaagagtggcttcttttcgttgtagtcttcacata--aattcttgaagaatagaaatgaatctcttca 417  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  32492828 aacaagagtggcttcttttcgttgcagtcttcacatataaattcttgaagaatagaaatgaatctcttca 32492759  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 20287476 - 20287513
Alignment:
Q  22 tcaataaatatgaaagtcaaacagaggtggcaagacgg 59  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  20287476 tcaataaatatgaaagtcaaacagaggtgacaagacgg 20287513  T

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