View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_342 (Length: 230)
Name: NF10049A_low_342
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_342 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 2442893 - 2442696
Alignment:
| Q |
13 |
caacaatatttgtatatgagtttgttaaccttgtttttgtttcaagttcatctcactgacactgtttaccagaaattgatcgagggctcctctatattac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
2442893 |
caacaatatttgtatatgagtttgttaaccttgtttttgtttcaagttcatcacactaacactgtttaccagaaattgatcgagggcttctttatattac |
2442794 |
T |
|
| Q |
113 |
cattttacaatgcaattctagaaattttgtatcattctaccgcatgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcggtc |
210 |
Q |
| |
|
||||||||||| | || || |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2442793 |
cattttacaatcaatttatacaaattttgtatcattctatcgcacgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcggtc |
2442696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 50984196 - 50984328
Alignment:
| Q |
41 |
ccttgtttttgtttcaagttcatctcactgacactgt--ttaccagaaattgatcgagggctcctctatattaccattttacaatgcaattctagaaatt |
138 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| ||||| || | |||||||||| ||||||| ||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
50984196 |
ccttgattttgtttcaacttcatctcactgaaactgtgttttctagaaattgattgagggcttctctatattaccatttt-caat-caattctacaaatt |
50984293 |
T |
|
| Q |
139 |
ttgtatcattctaccgcatgcagagcaagatagtc |
173 |
Q |
| |
|
|||| | | ||| | ||||||||||||||||||| |
|
|
| T |
50984294 |
ttgttttaatctgtcacatgcagagcaagatagtc |
50984328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 34019916 - 34019952
Alignment:
| Q |
161 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34019916 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
34019952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University