View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_344 (Length: 230)
Name: NF10049A_low_344
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_344 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9538750 - 9538528
Alignment:
| Q |
1 |
actaagttcctttatcaaagcatttaaccccttcttcattactctttactcaactctcatacattttttcttctagctttctctccaattctcaaactta |
100 |
Q |
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| T |
9538750 |
actaagtccctttatcaaagcatttaaccacttcttcatgactctttactcaactctcatatattttttcttctaacttcctctccaattctcaaactta |
9538651 |
T |
|
| Q |
101 |
atttcttcacaatcatccatctctcaaatggatatcaaaattttcattattgcatctatcctaacctcaacattgttctttgttctttacattcccacca |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9538650 |
atttcttcacaatcatccatct-tcaaatggatatcaaaattttcattattgcatctatcctaacctcaacattgttctttgttctttacattcccacca |
9538552 |
T |
|
| Q |
201 |
aattaaccataccaacctcaaact |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
9538551 |
aattaaccataccaacctcaaact |
9538528 |
T |
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