View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_346 (Length: 230)
Name: NF10049A_low_346
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_346 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 20211111 - 20210890
Alignment:
| Q |
1 |
aacctttcgattttgaagataaaaaatgttatgataattcagtgtttgaggcagataaacttgatcaatgattgtatttgttagaagagcagtgctattt |
100 |
Q |
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| T |
20211111 |
aacctttcgattttgaagataaaaaatgttatgataattcagtgtttgaggcaaataaacttgatcaatgattgtatttgttagaagagcagtgctattt |
20211012 |
T |
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| Q |
101 |
taagggaaagaaatcatcccgaaatgatcccgactgaaaattagccaatcaaattcttactttggcggaataaaaggaggaataagactgcaatcaagag |
200 |
Q |
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| T |
20211011 |
taaggaaaagaaatcatcccgaaatgatcccgactgaaaattagccaattaaattcttgctttggcagaataaaaggaggagtgagactgcaatcaggag |
20210912 |
T |
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| Q |
201 |
acagagagagataaatggtata |
222 |
Q |
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| T |
20210911 |
acagagagagataaatggtata |
20210890 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 27894009 - 27894075
Alignment:
| Q |
87 |
gagcagtgctattttaagggaaagaaatcatcccgaaatgatcccgactgaaaattagccaatcaaa |
153 |
Q |
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| T |
27894009 |
gagcagtgctatttcaagggaaagaaaacatcaccaattgatcctgaataaaaattaaccaatcaaa |
27894075 |
T |
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