View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_35 (Length: 423)
Name: NF10049A_low_35
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 6 - 417
Target Start/End: Original strand, 33498965 - 33499377
Alignment:
| Q |
6 |
tttggtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
105 |
Q |
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| T |
33498965 |
tttggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33499064 |
T |
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| Q |
106 |
ccttctcttctcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaccaagcttcacttggcgcaaactcgatggagga |
205 |
Q |
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| T |
33499065 |
ccttctcttctcttgagtagtgtgagagcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggagga |
33499164 |
T |
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| Q |
206 |
aacttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttcc-tcc |
304 |
Q |
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| T |
33499165 |
aacttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttccttcc |
33499264 |
T |
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| Q |
305 |
tatcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttcca |
404 |
Q |
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| T |
33499265 |
gatcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttcta |
33499364 |
T |
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| Q |
405 |
atattgtaaactg |
417 |
Q |
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| T |
33499365 |
atattgtaaactg |
33499377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 33485754 - 33485867
Alignment:
| Q |
6 |
tttggtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
105 |
Q |
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| T |
33485754 |
tttggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33485853 |
T |
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| Q |
106 |
ccttctcttctctt |
119 |
Q |
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| T |
33485854 |
ccttctctcctctt |
33485867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 116 - 270
Target Start/End: Original strand, 33486058 - 33486212
Alignment:
| Q |
116 |
tcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaccaagcttcacttggcgcaaactcgatggaggaaacttacaag |
215 |
Q |
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| T |
33486058 |
tcttgagtagtacgagtgtgaatagctcaattgaattgtcttaattttgcaggcaaaacaagcttcacatgacgcaaattcaatgaaggaaacatacaag |
33486157 |
T |
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| Q |
216 |
caagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaactt |
270 |
Q |
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| T |
33486158 |
catgcggctggagaaattatgatgtggatcgcttagaattttgatcataaaactt |
33486212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 33486210 - 33486284
Alignment:
| Q |
331 |
ctttgatggtcctatgagacatttt-atggtgtttaaactagtta-aattatttgctttttgtgtttgcttttcc |
403 |
Q |
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| T |
33486210 |
ctttgatggtcctaagagcaatttttatggtgtttaaactagttttaattatatgctttttgtgtttgcttttcc |
33486284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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