View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_351 (Length: 229)
Name: NF10049A_low_351
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_351 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19772216 - 19771994
Alignment:
| Q |
1 |
actggcggtcgtttcacctggcatcataataacaatggccttcacatcatctcaaagaagctaaatcagggtctagaaaatgttgcttggcgcctcgcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19772216 |
actggcggtcgtttcacctggcatcataataacaatggccttcacatcatctcaaagaagctaaatcagggtctagaaaatgttgcttggcgcctcgcct |
19772117 |
T |
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| Q |
101 |
tccgagaggctttcgttgaagttcttttaatgctgacttgattcttaactgaagcttggactggccctagatgatctaaaaattttccaagttactctta |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19772116 |
tccgagaggctttcgctgaagttcttttaatgctgacttgattcttaactgaagcttggactggccctagatgatctaaaatttttccaagttactctta |
19772017 |
T |
|
| Q |
201 |
caccttacatggcatctggatct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
19772016 |
caccttacatggcatctggatct |
19771994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 18355415 - 18355631
Alignment:
| Q |
5 |
gcggtcgtttcacctggcatcataataacaatggccttcacatcatctcaaagaagctaaatcagggtctagaaaatgttgcttggcgcctcgccttccg |
104 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||| ||||| | |
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| T |
18355415 |
gcggccgtttcacctggcatcgtaataacaatggccttcacatcatctcaaagaagctata--agggtctagaaagtgttgcttggcaccttgccttatg |
18355512 |
T |
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| Q |
105 |
agaggctttcgttgaagttcttttaatgctgacttgattcttaactgaagcttggactggccctagatgatctaaaaattttccaagttactcttacacc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
18355513 |
agaggctttcgttgaagttcttttaatgctgacttgagtcttaactgatggttggactagccctagatgatctaaattttttccaagttactcttacacc |
18355612 |
T |
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| Q |
205 |
ttacatggcatctggatct |
223 |
Q |
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|||||| |||| ||||||| |
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| T |
18355613 |
ttacatagcatatggatct |
18355631 |
T |
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