View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_352 (Length: 229)
Name: NF10049A_low_352
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_352 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 2891617 - 2891389
Alignment:
| Q |
7 |
aacgcaacattgcagatcactctcgagttagtttcttggaacaaagcaacttttcgtaagctgcttctcaaggaaggagaaggagctgac----cgtcca |
102 |
Q |
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| T |
2891617 |
aacgcaacattgcagatcactctcaggttagtttcttggaacaaagcaacttttcataagcagcttctcaaggaaggagaaggagctgacgtaccgtcca |
2891518 |
T |
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| Q |
103 |
aatgagggagctcttgtgaaatgtaaatcatcattcatcattgattgattgctaatatattatgaaatgatggctcnnnnnnnnaatggatttagtg--t |
200 |
Q |
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| T |
2891517 |
aatgagggagctcttgtgaaatgtaaatcatcattcatcattgattgattgctaatatattatgatatgatggctctcttttttaatggatttagtgcat |
2891418 |
T |
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| Q |
201 |
cgtttctgatgtgttgtctcctcattttg |
229 |
Q |
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| T |
2891417 |
cggttctgatgtgttatctcctcattttg |
2891389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 3143645 - 3143874
Alignment:
| Q |
7 |
aacgcaacattgcagatcactctcgagttagtttcttggaacaaagcaacttttcgtaagctgcttctcaaggaaggagaaggagctga----ccgtcca |
102 |
Q |
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| T |
3143645 |
aacgcaacattgcagatcactctcaggttagtttcttggtacaaagcaacttttcataagcagcttctcaaggaaggagaaggagctgatgtaccgtcca |
3143744 |
T |
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| Q |
103 |
aatgagggagctcttgtgaaatgtaaatcatcattcatcattgattgattgctaatatattatgaaatgatggctc-nnnnnnnnaatggatttagtg-- |
199 |
Q |
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| T |
3143745 |
aatgagggagctcttgtgaaatgtaaatcatcattcatcattgattgattgctaatatattatgatatgatggctctttttttttaatggatttagtgca |
3143844 |
T |
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| Q |
200 |
tcgtttctgatgtgttgtctcctcattttg |
229 |
Q |
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| T |
3143845 |
tcggttctgatgtgttatctcctcattttg |
3143874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 2877158 - 2877036
Alignment:
| Q |
7 |
aacgcaacattgcagatcactctcgagttagtttcttggaacaaagcaacttttcgtaagctgcttctcaaggaaggagaaggagctgaccgtccaaatg |
106 |
Q |
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| T |
2877158 |
aacgcaacattgcagattattctcgagtttgtttcttggaaggaatgaccttttcgtaagatggtcctcaaggaaggagaaggagacgactgtccaaatg |
2877059 |
T |
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| Q |
107 |
agggagctcttgtgaaatgtaaa |
129 |
Q |
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| T |
2877058 |
agggagctcttgtgaaatgtaaa |
2877036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 2794617 - 2794694
Alignment:
| Q |
56 |
cttttcgtaagctgcttctcaaggaaggagaaggagctgaccgtccaaatgagggagctcttgtgaaatgtaaatcat |
133 |
Q |
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| T |
2794617 |
cttttcgtaagatggtcctcaaggaaggagaaggggacgactgtccaaatgagggagctcttgtgaaatgtaaatcat |
2794694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 3495639 - 3495580
Alignment:
| Q |
74 |
tcaaggaaggagaaggagctgaccgtccaaatgagggagctcttgtgaaatgtaaatcat |
133 |
Q |
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| T |
3495639 |
tcaaggaaggagaaggatatgagcgtccaaatgatggagctgttgtaaaatgtaaatcat |
3495580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 3500719 - 3500680
Alignment:
| Q |
98 |
gtccaaatgagggagctcttgtgaaatgtaaatcatcatt |
137 |
Q |
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| T |
3500719 |
gtccaaatgagggatctgttgtgaaatgtaaatcatcatt |
3500680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 8627518 - 8627552
Alignment:
| Q |
103 |
aatgagggagctcttgtgaaatgtaaatcatcatt |
137 |
Q |
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| T |
8627518 |
aatgagggagctgttgtgaaatgtaaatcatcatt |
8627552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 2794556 - 2794596
Alignment:
| Q |
7 |
aacgcaacattgcagatcactctcgagttagtttcttggaa |
47 |
Q |
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| T |
2794556 |
aacgcaacattgcagattattctcgagtttgtttcttggaa |
2794596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 13005652 - 13005716
Alignment:
| Q |
102 |
aaatgagggagctcttgtgaaatgtaaatcatcattcatcattgattgattgctaatatattatga |
167 |
Q |
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| T |
13005652 |
aaatgagaaagctcttgtgaaatgtaaatcatcattcataattcattga-tgctaatatattatga |
13005716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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