View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_354 (Length: 229)

Name: NF10049A_low_354
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_354
NF10049A_low_354
[»] chr2 (2 HSPs)
chr2 (1-223)||(24546261-24546483)
chr2 (50-222)||(24538936-24539105)
[»] scaffold0945 (1 HSPs)
scaffold0945 (34-223)||(394-583)
[»] chr5 (1 HSPs)
chr5 (50-114)||(1667880-1667944)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24546261 - 24546483
Alignment:
Q  1 agaaagaacattggggagcaccccattaatagaaggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  24546261 agaaagaacattggggagcaccccattaatagaaggtgcatcttgtaggttggtgcaatctgtcgccttgaaagataccagttgcttttccaaatcaaac 24546360  T
Q  101 ccaatcaaataattggactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaa 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24546361 ccaatcaaataatttgactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcaaaaaataccatcttgtaccggaa 24546460  T
Q  201 tgaagatttgagtgggcgttaaa 223  Q
    |||||||||| ||||||||||||    
T  24546461 tgaagatttgggtgggcgttaaa 24546483  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 24538936 - 24539105
Alignment:
Q  50 ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattcgt 149  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||| |||||||||| || ||||||| |    
T  24538936 ttggtgcaatctgttgccttgaaagaaaccacctgcctttccaaatcaaacccaatcaaatagtttgactgggcatagtttccataagtgacatattctt 24539035  T
Q  150 tactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaagatttgagtgggcgttaa 222  Q
     | |   ||||  |  || ||| ||||||||| || ||||||||||||||||||| ||||||| |||||||||    
T  24539036 catt---agtgtcgaagactgcgaagcagaaattatcatcttgtaccggaatgaacatttgagcgggcgttaa 24539105  T

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Target: scaffold0945 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0945
Description:

Target: scaffold0945; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 583 - 394
Alignment:
Q  34 aggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttcca 133  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||  ||| | |||||    
T  583 aggtgcatcttgtaagttggtgcaatctgtggccttgaaagaaaccacttgcttttccaaatcaaacccaatcaaataatttgactgcacatagcttcca 484  T
Q  134 taaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaagatttgagtgggcgttaaa 223  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  483 taagtgccatattcgttactaaaagagctggtgaatgcaaagcagaaaataccatattgtaccggaatgaagatttgagttggcgttaaa 394  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 1667880 - 1667944
Alignment:
Q  50 ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataatt 114  Q
    ||||| |||||||| | ||||||||| |||||||| || ||||||||||| || || ||||||||    
T  1667880 ttggtacaatctgttggcttgaaagagaccacttgtctatccaaatcaaatcctattaaataatt 1667944  T

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