View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_354 (Length: 229)
Name: NF10049A_low_354
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_354 |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24546261 - 24546483
Alignment:
| Q |
1 |
agaaagaacattggggagcaccccattaatagaaggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaac |
100 |
Q |
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| T |
24546261 |
agaaagaacattggggagcaccccattaatagaaggtgcatcttgtaggttggtgcaatctgtcgccttgaaagataccagttgcttttccaaatcaaac |
24546360 |
T |
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| Q |
101 |
ccaatcaaataattggactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaa |
200 |
Q |
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| T |
24546361 |
ccaatcaaataatttgactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcaaaaaataccatcttgtaccggaa |
24546460 |
T |
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| Q |
201 |
tgaagatttgagtgggcgttaaa |
223 |
Q |
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|||||||||| |||||||||||| |
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| T |
24546461 |
tgaagatttgggtgggcgttaaa |
24546483 |
T |
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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 24538936 - 24539105
Alignment:
| Q |
50 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattcgt |
149 |
Q |
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| T |
24538936 |
ttggtgcaatctgttgccttgaaagaaaccacctgcctttccaaatcaaacccaatcaaatagtttgactgggcatagtttccataagtgacatattctt |
24539035 |
T |
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| Q |
150 |
tactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaagatttgagtgggcgttaa |
222 |
Q |
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| T |
24539036 |
catt---agtgtcgaagactgcgaagcagaaattatcatcttgtaccggaatgaacatttgagcgggcgttaa |
24539105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 583 - 394
Alignment:
| Q |
34 |
aggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttcca |
133 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||| | ||||| |
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| T |
583 |
aggtgcatcttgtaagttggtgcaatctgtggccttgaaagaaaccacttgcttttccaaatcaaacccaatcaaataatttgactgcacatagcttcca |
484 |
T |
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| Q |
134 |
taaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaagatttgagtgggcgttaaa |
223 |
Q |
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| T |
483 |
taagtgccatattcgttactaaaagagctggtgaatgcaaagcagaaaataccatattgtaccggaatgaagatttgagttggcgttaaa |
394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 1667880 - 1667944
Alignment:
| Q |
50 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataatt |
114 |
Q |
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| T |
1667880 |
ttggtacaatctgttggcttgaaagagaccacttgtctatccaaatcaaatcctattaaataatt |
1667944 |
T |
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