View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_357 (Length: 229)
Name: NF10049A_low_357
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_357 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 430568 - 430357
Alignment:
| Q |
1 |
aatcaattcacattactcttgagcaaggcaatcatcatataccagaaccaagtccgcaagaaatgcaagtacaagagaataacacgtaccttagcaacaa |
100 |
Q |
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| T |
430568 |
aatcaatgcacattactcttgagcaaggcaatcatcatataccagaaccaagtccgcaagaaatgcaagtacaagagaataacacgtaccttagcaacaa |
430469 |
T |
|
| Q |
101 |
agaaaagaacnnnnnnnnnnnnnnnnnnnnatggaatttaatcaacgaataattaattatatacatgcaaatgaaatataaaatcaatattaggaaagaa |
200 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
430468 |
agaaaagaac-----ttttttttttattttatggaattttatcaacgaataattaattatatacatgcaaatgaaatataaaatcaatattaggaaagaa |
430374 |
T |
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| Q |
201 |
aaagttgtttttaaggg |
217 |
Q |
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||||||||||||||||| |
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| T |
430373 |
aaagttgtttttaaggg |
430357 |
T |
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