View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_358 (Length: 229)

Name: NF10049A_low_358
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_358
NF10049A_low_358
[»] chr1 (4 HSPs)
chr1 (20-209)||(18438563-18438749)
chr1 (20-209)||(18449421-18449607)
chr1 (20-209)||(18454514-18454700)
chr1 (57-108)||(42080703-42080754)
[»] chr2 (5 HSPs)
chr2 (20-209)||(31320217-31320417)
chr2 (47-201)||(9446963-9447128)
chr2 (50-108)||(21949909-21949967)
chr2 (166-209)||(38346614-38346657)
chr2 (60-108)||(14555896-14555944)
[»] chr5 (2 HSPs)
chr5 (40-203)||(31610025-31610199)
chr5 (54-109)||(11888191-11888246)
[»] chr7 (3 HSPs)
chr7 (60-108)||(8425057-8425105)
chr7 (57-108)||(49094557-49094608)
chr7 (165-202)||(30559269-30559306)
[»] chr6 (1 HSPs)
chr6 (57-109)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (57-108)||(2048991-2049042)
chr4 (57-108)||(39735820-39735871)
chr4 (59-108)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (60-108)||(16545-16593)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 18438563 - 18438749
Alignment:
Q  20 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatctgactgtcttg 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18438563 gaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 18438662  T
Q  120 ttgaaagttccatatcttgcagttgttgtgcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 209  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438663 ttgaaagttccatatcttgcagttgtt---cttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 18438749  T

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Target: chr1; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 18449421 - 18449607
Alignment:
Q  20 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatctgactgtcttg 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18449421 gaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 18449520  T
Q  120 ttgaaagttccatatcttgcagttgttgtgcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 209  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449521 ttgaaagttccatatcttgcagttgtt---cttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 18449607  T

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Target: chr1; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 18454514 - 18454700
Alignment:
Q  20 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatctgactgtcttg 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18454514 gaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 18454613  T
Q  120 ttgaaagttccatatcttgcagttgttgtgcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 209  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454614 ttgaaagttccatatcttgcagttgtt---cttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatag 18454700  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 42080754 - 42080703
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc 108  Q
    |||||||||||||| ||||  ||||||||||||||||| | |||||||||||    
T  42080754 agtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatc 42080703  T

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Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 31320217 - 31320417
Alignment:
Q  20 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc----------- 108  Q
    |||||||||| ||||||| ||| |||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||               
T  31320217 gaagagtaaaagaggcagacatcagaagcaatacactagtagtgagctcatacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatg 31320316  T
Q  109 tgactgtcttgttgaaagttccatatcttgcagttgttgtgcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggata 208  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  31320317 tgattgtcttgttgaaagttccatatcttgcagttgttgttcttatttgggttcatcttctgctattctagatggttgctgaatctatcttagtgggata 31320416  T
Q  209 g 209  Q
    |    
T  31320417 g 31320417  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 9446963 - 9447128
Alignment:
Q  47 gcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc-----------tgactgtcttgttgaaagttccatatc 135  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||           |||||||||||||||||||||||||||    
T  9446963 gcaaaacactagtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgtcttgttgaaagttccatatc 9447062  T
Q  136 ttgcagttgttgtgcttatttgagttcaacttctgttattttagatggttgctgaatctatcttag 201  Q
    ||||||||||||| ||||| || ||||||||||||||||||| |||||| ||||||||||||||||    
T  9447063 ttgcagttgttgttcttatgtgggttcaacttctgttattttggatggtggctgaatctatcttag 9447128  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 21949967 - 21949909
Alignment:
Q  50 aaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc 108  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||| | |||||||||||    
T  21949967 aaacactagtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatc 21949909  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 38346657 - 38346614
Alignment:
Q  166 ttctgttattttagatggttgctgaatctatcttagtgggatag 209  Q
    |||||||||||| | ||||||||||||||||||| |||||||||    
T  38346657 ttctgttattttggttggttgctgaatctatcttggtgggatag 38346614  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 14555896 - 14555944
Alignment:
Q  60 agtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc 108  Q
    ||||| || |||||||  ||||||||||||||||||| |||||||||||    
T  14555896 agtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatc 14555944  T

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Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 31610025 - 31610199
Alignment:
Q  40 ataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatct-----------gactgtcttgttgaaagtt 128  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||            |||||||||||||||||||    
T  31610025 ataagaagcaaaacactagtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgtcttgttgaaagtt 31610124  T
Q  129 ccatatcttgcagttgttgtgcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtg 203  Q
    |||||| ||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  31610125 ccatattttgtagttgttgttcttatttgggttcaacttctgatattttagatggttgctgaatctatcttagtg 31610199  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 11888246 - 11888191
Alignment:
Q  54 actagtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatct 109  Q
    |||||||||||||| |||||||  |||||||| |||||||||| ||||||||||||    
T  11888246 actagtagtgagcatatacaaattcgttccaagaagggtgtgatcaaaagcaatct 11888191  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 8425057 - 8425105
Alignment:
Q  60 agtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc 108  Q
    ||||||||||||||||  |||||||| |||||||||| |||||||||||    
T  8425057 agtgagcacatacaaactcgttccaagaagggtgtgatcaaaagcaatc 8425105  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 49094608 - 49094557
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc 108  Q
    |||||||||||||||||||  ||||||||||| ||||| | |||||||||||    
T  49094608 agtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatc 49094557  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 30559306 - 30559269
Alignment:
Q  165 cttctgttattttagatggttgctgaatctatcttagt 202  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  30559306 cttctgttattttgggtggttgctgaatctatcttagt 30559269  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 6982841 - 6982893
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatct 109  Q
    |||||||||||||||||||  ||||| ||||||||||| | ||||||||||||    
T  6982841 agtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatct 6982893  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 2048991 - 2049042
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc 108  Q
    ||||||||||| |||||||  ||||||||||||||||| | |||||||||||    
T  2048991 agtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatc 2049042  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 39735820 - 39735871
Alignment:
Q  57 agtagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc 108  Q
    |||||||||||||||||||  |||||||| |||||||| | |||||||||||    
T  39735820 agtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatc 39735871  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 3959006 - 3958957
Alignment:
Q  59 tagtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc 108  Q
    |||||||||||||||||  ||||| ||||||||||| | |||||||||||    
T  3959006 tagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatc 3958957  T

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Target: scaffold0141 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 16593 - 16545
Alignment:
Q  60 agtgagcacatacaaaagcgttccaaaaagggtgtgagcaaaagcaatc 108  Q
    |||||||||||| |||  |||||||| |||||||||| |||||||||||    
T  16593 agtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatc 16545  T

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