View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_360 (Length: 229)
Name: NF10049A_low_360
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_360 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 29242391 - 29242168
Alignment:
| Q |
6 |
agccacaaatgaaaaataactgctcgaagaaagtgcctatggaaacattatgtaaaaggaaataaagggtacaaaaacaggaacaaaagcaaagcagaac |
105 |
Q |
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| T |
29242391 |
agccacaaatgaaaaataactgctcgaagaaagtgcctatggaaacattatgtaaaaggaaataaagggtacaaaaacaggaacaaaagcaaagcagaac |
29242292 |
T |
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| Q |
106 |
acgaatgatattgctggctgactgtgttaaatttgtgtaagagagagaaaaaaggataaataaagaacatgcacctgccacgttgtcctagtgaagggta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29242291 |
acgaatgatattgctggctgactgtgttaaatttgtgtaagagagagaaaaaaggataaataaagaacatgcacctgccacgttgtcctagtgaagggta |
29242192 |
T |
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| Q |
206 |
tttagaactttgaagcaataattg |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
29242191 |
tttagaactttgaagcaataattg |
29242168 |
T |
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