View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_365 (Length: 228)

Name: NF10049A_low_365
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_365
NF10049A_low_365
[»] chr2 (7 HSPs)
chr2 (11-211)||(2803204-2803404)
chr2 (21-95)||(33561499-33561573)
chr2 (23-95)||(30312825-30312897)
chr2 (22-95)||(29873586-29873659)
chr2 (23-64)||(36005930-36005971)
chr2 (11-95)||(2336660-2336744)
chr2 (20-64)||(31468797-31468841)
[»] chr6 (4 HSPs)
chr6 (18-95)||(8481962-8482039)
chr6 (28-95)||(5034876-5034943)
chr6 (54-95)||(27226675-27226716)
chr6 (23-95)||(6071168-6071240)
[»] chr5 (2 HSPs)
chr5 (11-125)||(10351209-10351325)
chr5 (23-95)||(36521946-36522018)
[»] chr1 (3 HSPs)
chr1 (23-95)||(1188638-1188710)
chr1 (18-64)||(32594761-32594807)
chr1 (22-95)||(1187413-1187486)
[»] chr4 (4 HSPs)
chr4 (18-64)||(22028412-22028458)
chr4 (42-120)||(42480533-42480611)
chr4 (23-95)||(34544142-34544215)
chr4 (11-87)||(23630348-23630424)
[»] chr8 (2 HSPs)
chr8 (18-95)||(4154326-4154402)
chr8 (11-120)||(40991764-40991873)
[»] chr7 (2 HSPs)
chr7 (11-60)||(7192786-7192835)
chr7 (23-64)||(21619095-21619136)
[»] chr3 (2 HSPs)
chr3 (54-95)||(260805-260846)
chr3 (43-87)||(32930731-32930775)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 2803204 - 2803404
Alignment:
Q  11 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgg 110  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  2803204 tgagttggacatcacacttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtga 2803303  T
Q  111 gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803304 gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaa 2803403  T
Q  211 a 211  Q
    |    
T  2803404 a 2803404  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 33561499 - 33561573
Alignment:
Q  21 atcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||||||| ||||||||||| |||||||| |||||||||||||| ||||  ||||| | |||| |||||||||||    
T  33561499 atcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt 33561573  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 30312897 - 30312825
Alignment:
Q  23 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||||||||||||||||| |||||  | | ||||||||||||||||   ||||| | ||||||||||||||||    
T  30312897 cacacttttacccaaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttcaacctccactt 30312825  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 29873586 - 29873659
Alignment:
Q  22 tcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    ||||||| |||| |||||| ||||| || |||||||||| ||| || |  ||||| ||||||||||||||||||    
T  29873586 tcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttcaacctccactt 29873659  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 36005930 - 36005971
Alignment:
Q  23 cacacttttacccaaaacgttaagacattgagtttatgggtc 64  Q
    |||||||||||||||||| ||||| || ||||||||||||||    
T  36005930 cacacttttacccaaaaccttaaggcaatgagtttatgggtc 36005971  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 2336744 - 2336660
Alignment:
Q  11 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||| |||||| ||||  || ||||||||  ||||| |||||| |||||||||| ||||  ||||| | ||||||||||||||||    
T  2336744 tgagttggacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccactt 2336660  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 31468797 - 31468841
Alignment:
Q  20 catcacacttttacccaaaacgttaagacattgagtttatgggtc 64  Q
    ||||||||| ||||||||||| ||||| || ||||||||||||||    
T  31468797 catcacactcttacccaaaaccttaaggcaatgagtttatgggtc 31468841  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 8482039 - 8481962
Alignment:
Q  18 gacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||| |||||| ||||||||||  ||||| || |||||||||| |||||||| |||||| | ||||||||||||||||    
T  8482039 gacaccacactcttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt 8481962  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 5034876 - 5034943
Alignment:
Q  28 ttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    ||||| ||||||| |||| |||||||||| ||||||||||||  ||||| | || |||||||||||||    
T  5034876 ttttatccaaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccactt 5034943  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 27226675 - 27226716
Alignment:
Q  54 gtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  27226675 gtttatgggtcatctcatttataaaatgatcaacctccactt 27226716  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 6071240 - 6071168
Alignment:
Q  23 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||||| ||| ||||||  ||||| || ||||||||||| |||||||  ||||| | ||||||||||||||||    
T  6071240 cacactcttatccaaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccactt 6071168  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 10351209 - 10351325
Alignment:
Q  11 tgagatggacatcacacttttacccaaaacg--ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgt 108  Q
    |||||| ||||||||||||||||||||||    |||||||| |||||||||||||||| ||   |||| |||||||||||||| ||| ||||   |||||    
T  10351209 tgagatagacatcacacttttacccaaaaatatttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgt 10351308  T
Q  109 gggacttttaacctaca 125  Q
    | ||||| |||| ||||    
T  10351309 gagacttctaacttaca 10351325  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 36521946 - 36522018
Alignment:
Q  23 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||||| ||||||||||| ||||| || |  ||||||||||| |||| |||| ||| ||||||||||| ||||    
T  36521946 cacactcttacccaaaaccttaaggcaattggtttatgggtcctctcatttaaagagtgttcaacctcaactt 36522018  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 1188638 - 1188710
Alignment:
Q  23 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||||||||||||||||| ||||  || |||||||||| ||| ||||  ||||| ||| ||||||||||||||    
T  1188638 cacacttttacccaaaaccttaaagcaatgagtttatgagtcttctcacttataaaatattcaacctccactt 1188710  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 32594761 - 32594807
Alignment:
Q  18 gacatcacacttttacccaaaacgttaagacattgagtttatgggtc 64  Q
    |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  32594761 gacaccacactcttacccaaaaccttaagacaatgagtttatgggtc 32594807  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 1187413 - 1187486
Alignment:
Q  22 tcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||||||||||| |||||  |||||  | |||||||||||||| ||||  ||||| |||||| |||||||||||    
T  1187413 tcacacttttactcaaaatcttaaggtaatgagtttatgggtcttctcacttataaaatgtttaacctccactt 1187486  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 22028412 - 22028458
Alignment:
Q  18 gacatcacacttttacccaaaacgttaagacattgagtttatgggtc 64  Q
    |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  22028412 gacaccacactcttacccaaaacattaagacaatgagtttatgggtc 22028458  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
Q  42 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgggacttttaac 120  Q
    ||||||||| |||||||||| |||||||  ||| | | |||||||||||||||| || ||||| | || ||||||||||    
T  42480611 ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac 42480533  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 34544215 - 34544142
Alignment:
Q  23 cacacttttacccaaaa-cgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||||| |||||||||| | ||||| || |||||||||||||| |||| |||||| | || |||||||||||||    
T  34544215 cacactcttacccaaaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccactt 34544142  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 23630424 - 23630348
Alignment:
Q  11 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaac 87  Q
    ||||| ||| ||||||||||||||||||   ||||||| ||||||||||| ||| ||||  ||||| | ||||||||    
T  23630424 tgagagggaaatcacacttttacccaaagtcttaagacgttgagtttatgagtcgtctcacttataaagtgttcaac 23630348  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 4154326 - 4154402
Alignment:
Q  18 gacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    ||||||||||  ||||||||||  ||||| || |||||||||||||| ||||  ||||| | ||||||||||||||||    
T  4154326 gacatcacacacttacccaaaatattaaggcaatgagtttatgggtc-tctcacttataaagtgttcaacctccactt 4154402  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 40991873 - 40991764
Alignment:
Q  11 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgg 110  Q
    |||| |||||| ||||  || ||||||||| || || ||||| ||||||||||| ||||  ||||  | |||||||||||||||| | |||  |||||||    
T  40991873 tgagttggacaccacatcttaacccaaaaccttgaggcattgggtttatgggtcctctcacttatgaagtgttcaacctccacttttctaagcaatgtgg 40991774  T
Q  111 gacttttaac 120  Q
    ||||| ||||    
T  40991773 gacttctaac 40991764  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 7192835 - 7192786
Alignment:
Q  11 tgagatggacatcacacttttacccaaaacgttaagacattgagtttatg 60  Q
    |||| |||||||||||  ||||| |||||| |||||||||||||||||||    
T  7192835 tgagttggacatcacatctttactcaaaaccttaagacattgagtttatg 7192786  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 21619095 - 21619136
Alignment:
Q  23 cacacttttacccaaaacgttaagacattgagtttatgggtc 64  Q
    |||||||||||||||||| |||||||| || |||||||||||    
T  21619095 cacacttttacccaaaaccttaagacaatgggtttatgggtc 21619136  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 260805 - 260846
Alignment:
Q  54 gtttatgggtcatctcttttatagaatgttcaacctccactt 95  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  260805 gtttatgggtcatctcatttataaaatgatcaacctccactt 260846  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 32930775 - 32930731
Alignment:
Q  43 taagacattgagtttatgggtcatctcttttatagaatgttcaac 87  Q
    |||||||||||||||||| ||||||||  ||||| ||||||||||    
T  32930775 taagacattgagtttatgagtcatctcacttataaaatgttcaac 32930731  T

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