View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_367 (Length: 227)

Name: NF10049A_low_367
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_367
NF10049A_low_367
[»] chr8 (2 HSPs)
chr8 (2-227)||(41311027-41311252)
chr8 (7-227)||(43164710-43164930)
[»] chr7 (6 HSPs)
chr7 (7-217)||(30165685-30165883)
chr7 (105-178)||(28180965-28181038)
chr7 (2-181)||(30124981-30125160)
chr7 (135-181)||(30131068-30131114)
chr7 (4-37)||(30130934-30130967)
chr7 (135-179)||(30120068-30120112)
[»] chr2 (1 HSPs)
chr2 (120-181)||(21426642-21426703)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 41311027 - 41311252
Alignment:
Q  2 attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaatcctagtag 101  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41311027 attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 41311126  T
Q  102 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttacatcaaaggcaataataacatccatctcagtcttatcatcata 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  41311127 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 41311226  T
Q  202 attcagccaatgaatacaatcattca 227  Q
    |  ||||||||||||| || ||||||    
T  41311227 aaccagccaatgaatagaaccattca 41311252  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 43164710 - 43164930
Alignment:
Q  7 gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaatcctagtagagtaa 106  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| |||||||||||   | | |||  ||    
T  43164710 gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa 43164809  T
Q  107 tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttacatcaaaggcaataataacatccatctcagtcttatcatcataattca 206  Q
    |||||||||||| ||||||| |||||| ||||||||| |||| ||||||||| |||| |||||||||||||||| || ||||||| || || ||||  ||    
T  43164810 tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca 43164909  T
Q  207 gccaatgaatacaatcattca 227  Q
    ||||||||||| || ||||||    
T  43164910 gccaatgaatagaaccattca 43164930  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 30165883 - 30165685
Alignment:
Q  7 gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaatcctagtagagtaa 106  Q
    |||||||||||||||||||||||||| ||||| | |||||| |||||||||||| |||||||    |||||||| |||||||||||| |               
T  30165883 gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- 30165795  T
Q  107 tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttacatcaaaggcaataataacatccatctcagtcttatcatcataattca 206  Q
     ||| | || || ||| ||| |||||  |||||| || ||||  |||||||| |||||||||||||||||||||||| ||||||| || || ||||  ||    
T  30165794 -cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca 30165696  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 28180965 - 28181038
Alignment:
Q  105 aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttacatcaaaggcaataataaca 178  Q
    |||| ||||||||| ||||||| |||||  | ||||||| |||||||||||||| |||||||||||||||||||    
T  28180965 aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataaca 28181038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 30124981 - 30125160
Alignment:
Q  2 attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaatcctagtag 101  Q
    |||| |||||| |||||||||| |||||||| || |  |||||| | | |||||| ||| |||||||  |||||||| | ||||||||||     || ||    
T  30124981 attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag 30125080  T
Q  102 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttacatcaaaggcaataataacatcc 181  Q
    |||||||  |||||||| ||| ||| |||||  | ||||||| ||||  |||||||| ||||||||||| ||||||||||    
T  30125081 agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatcc 30125160  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 30131068 - 30131114
Alignment:
Q  135 tctctgacagtgtcatttcctttacatcaaaggcaataataacatcc 181  Q
    ||||||||| |||||||||||||| || |||||| ||||||||||||    
T  30131068 tctctgacattgtcatttcctttaaattaaaggctataataacatcc 30131114  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
Q  4 tgtgtattcttgcatcacccatatcttaagtgta 37  Q
    ||||||||||||||||||||||||||||| ||||    
T  30130934 tgtgtattcttgcatcacccatatcttaactgta 30130967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 30120068 - 30120112
Alignment:
Q  135 tctctgacagtgtcatttcctttacatcaaaggcaataataacat 179  Q
    ||||||| | |||| ||||||||| ||||||||||||||||||||    
T  30120068 tctctgatattgtcgtttcctttaaatcaaaggcaataataacat 30120112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 21426703 - 21426642
Alignment:
Q  120 catctgggagagcagtctctgacagtgtcatttcctttacatcaaaggcaataataacatcc 181  Q
    ||||||| |||||  ||||||||| |||  ||||||||| ||||| ||||||||||||||||    
T  21426703 catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcc 21426642  T

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