View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_37 (Length: 420)
Name: NF10049A_low_37
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 6 - 371
Target Start/End: Complemental strand, 31252154 - 31251788
Alignment:
| Q |
6 |
aaatccatctctcctgcatcacaaattaatgttggccctgataattctcatcacaaattccttttgattatatgattaattaacatctaattgattctta |
105 |
Q |
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| T |
31252154 |
aaatccatctctcctgcatcacaaattaatgttggccctgataattctcatcacaaattccttttgattctatgatttattaacatctaattgattctta |
31252055 |
T |
|
| Q |
106 |
tctcatttcattaccatgtataaaatcactccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31252054 |
tctcatttcattaccatgtataaaatcactccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgct |
31251955 |
T |
|
| Q |
206 |
acccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaacagaaacaatgacgagaaaagaaacacatcatttgattgnnnnnnnnnn |
305 |
Q |
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| T |
31251954 |
acccctaataaatcaccacttttgtgtatgaatgacatctagaattccaaacagaaacaatgacgagaaaagaaacacatcatttgattgtttttttcct |
31251855 |
T |
|
| Q |
306 |
nnnnatgacttagtatgtaaaataacaggtttaatgttatttttttga-ggaagagtcggtttaata |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31251854 |
ttttatgacttagtatgtaaaataacaggtttaatgttatttttttgagggaagagtcggtttaata |
31251788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 25814990 - 25815278
Alignment:
| Q |
6 |
aaatccatctctcctgcatcacaaattaatgttggccctgataattctcatcacaaattccttttgattatatgattaattaacatctaattgattctta |
105 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
25814990 |
aaatccatctctcttgcattacaaattaatgttggccctaataattctcatcacaaattccttttgattttatgattaattaacatcta-ttgattctta |
25815088 |
T |
|
| Q |
106 |
tctcatttcattaccatgtataaaatcactccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgct |
205 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25815089 |
tctcatttcattaccatgtataaaatgaccccattagatgataaagttaggtgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgct |
25815188 |
T |
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| Q |
206 |
acccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaacagaaacaatgacgagaaaagaaacacatcatttgattg |
295 |
Q |
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| T |
25815189 |
acccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaacagaaacaatgacgagaaaagaaacacatcatttgattg |
25815278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 23052768 - 23052912
Alignment:
| Q |
6 |
aaatccatctctcctgcatcacaaattaatgttggccctgataattctcatcacaaattccttttgattatatgattaattaacatctaattgattctta |
105 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||| | |
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| T |
23052768 |
aaatccatctctcctgcatcacatattaatgttggttctgataaatctcataacaaatttattttgattttatgattaattaacatctaattgattctca |
23052867 |
T |
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| Q |
106 |
tctcatttcattaccatgtataaaatcactccattagatgataaa |
150 |
Q |
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||||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
23052868 |
tctcattccatcaccatgtataaaatcacctcattagatgataaa |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 23052912 - 23052961
Alignment:
| Q |
181 |
aagttttatgcagttttggaatgctacccctaataaatcaccacttttgtg |
231 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||| |||| |
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| T |
23052912 |
aagttttatgcagttttggaatggt-cccctaataaatcaccacttgtgtg |
23052961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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