View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_376 (Length: 225)
Name: NF10049A_low_376
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_376 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 969133 - 968943
Alignment:
| Q |
16 |
atcacaaacaaccttatatcaagcaaataaatgaaaataacaataatttctcaaactgcaaattcaaatgaccattcattaacaattatccaagaagtaa |
115 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
969133 |
atcacaaacacccttatatcaagaaaataaatgaaaataacaataatttctcaaactgcagattcaaatgaccattcattaacaattatccaggaagtaa |
969034 |
T |
|
| Q |
116 |
ccaataatcagtacaaaacaattatagtaagcataaattaatatataaactgcagtcaaatctcttgttcacgtgacatagcaccacatat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
969033 |
ccaataatcagtacaaaacaattatagtaagcataaattaatatataaactgcaatcaaatctcttgtttaggtgacatagcaccacatat |
968943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 1940182 - 1940275
Alignment:
| Q |
39 |
caaataaatgaaaataacaataatttctcaaactgcaaattcaaatgaccattcattaacaattatccaagaagtaaccaataatcagtacaaa |
132 |
Q |
| |
|
||||||| | |||||||| | |||||||||| || || ||||||||| |||| || ||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
1940182 |
caaataagtaaaaataactacaatttctcaagctacatattcaaatggacattacttgacaatgatccatgaagtaaccaataatcagaacaaa |
1940275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University