View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_379 (Length: 224)
Name: NF10049A_low_379
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_379 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 41429394 - 41429539
Alignment:
| Q |
63 |
aaaactggttcgtaattaatttggcaaatccaacctgatctataatatagtgacccgtcagtgatcacccaaatgcattgagttgttacaaattgacagt |
162 |
Q |
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| T |
41429394 |
aaaactggttcgtaattaattgggcaaatccaacctgatctataatatagtgacccgtcagtgatcacccaaatgcattgagttgttacaaattgacagt |
41429493 |
T |
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| Q |
163 |
tttaatgatagaatgtttgagttttcctgtaaagacgagttatatt |
208 |
Q |
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| T |
41429494 |
tttaatgatagaatgtttgagttttcctgtaaagacgagttatatt |
41429539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 41429310 - 41429369
Alignment:
| Q |
20 |
aaaattcatatgtcaaaaaatcaaaagaacgaaaataagatggaaaactggttcgtaatt |
79 |
Q |
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| T |
41429310 |
aaaattcatatgtcaaaaaatcaaaagaacgaaaataagatggaaaactggttcgtaatt |
41429369 |
T |
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