View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_380 (Length: 223)
Name: NF10049A_low_380
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_380 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 24301264 - 24301052
Alignment:
| Q |
11 |
aatatgttggaagtgttggagtggactctgatcaatgttgaagaaaagtttcctcgttgagttgaaaaaagctcatcaatagctctaaacagatgctcat |
110 |
Q |
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| T |
24301264 |
aatatgttggaagtgttggagtggactctgatcaatgttgaagaaaagtttctccgttaagcgtatgaaagctcataaatggctccaaacaggtgcgcat |
24301165 |
T |
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| Q |
111 |
ccgaacccacactgcgggcttcgaagcccaaatgaaaattggtacaagaatgagcataaagttaaagatattttactaggttgtagggttggaaataaaa |
210 |
Q |
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| T |
24301164 |
cataacccacactgcgggcttcaaagcccaagtgaaaattggtacaagaatgagcataaagttaaagatattttactaggttgtatggttggaaataaaa |
24301065 |
T |
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| Q |
211 |
tatgatatgtcta |
223 |
Q |
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||||||||||||| |
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| T |
24301064 |
tatgatatgtcta |
24301052 |
T |
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