View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_382 (Length: 223)

Name: NF10049A_low_382
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_382
NF10049A_low_382
[»] chr6 (2 HSPs)
chr6 (1-223)||(340820-341042)
chr6 (1-216)||(336789-337004)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 341042 - 340820
Alignment:
Q  1 aactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccattgatctgaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341042 aactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccattgatctgaatct 340943  T
Q  101 gtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgacaaagttgtcaaagctcttgctcatgatgtagtgaacattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  340942 gtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgacaaagttgtcaaagctcttgctcatgatgtagtgaacattca 340843  T
Q  201 atggatcagttgtgataacacca 223  Q
    |||||||||||||||||||||||    
T  340842 atggatcagttgtgataacacca 340820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 337004 - 336789
Alignment:
Q  1 aactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccattgatctgaatct 100  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  337004 aactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccattgatgtgaatct 336905  T
Q  101 gtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgacaaagttgtcaaagctcttgctcatgatgtagtgaacattca 200  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||   ||||||||  |||| |||||||| ||||||||||||||||||||||||||||    
T  336904 gtagtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaacctcttgctcatgatgtagtgaacattca 336805  T
Q  201 atggatcagttgtgat 216  Q
    |||||||  |||||||    
T  336804 atggatcgtttgtgat 336789  T

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