View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_385 (Length: 222)

Name: NF10049A_low_385
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_385
NF10049A_low_385
[»] chr4 (34 HSPs)
chr4 (38-189)||(11284219-11284370)
chr4 (63-167)||(17931025-17931129)
chr4 (63-168)||(45936605-45936709)
chr4 (63-167)||(43890351-43890455)
chr4 (61-167)||(21168417-21168523)
chr4 (63-168)||(43887432-43887537)
chr4 (61-142)||(49792918-49792999)
chr4 (92-167)||(20902487-20902562)
chr4 (63-168)||(32719238-32719343)
chr4 (63-168)||(36774642-36774747)
chr4 (62-167)||(51029552-51029657)
chr4 (61-169)||(51025987-51026095)
chr4 (92-167)||(2774965-2775040)
chr4 (93-170)||(25761945-25762018)
chr4 (92-167)||(49790617-49790692)
chr4 (85-167)||(2332757-2332839)
chr4 (61-142)||(2772280-2772361)
chr4 (85-162)||(50910227-50910304)
chr4 (99-170)||(10466537-10466608)
chr4 (63-166)||(22436038-22436141)
chr4 (128-167)||(32715269-32715308)
chr4 (63-142)||(36390781-36390860)
chr4 (85-169)||(1593823-1593906)
chr4 (120-168)||(38193363-38193411)
chr4 (117-168)||(12024500-12024551)
chr4 (120-167)||(40732465-40732512)
chr4 (83-169)||(22438573-22438659)
chr4 (83-153)||(47658353-47658422)
chr4 (63-168)||(2567255-2567360)
chr4 (84-149)||(46513749-46513814)
chr4 (61-114)||(47873689-47873742)
chr4 (38-70)||(43890298-43890330)
chr4 (74-142)||(48093263-48093331)
chr4 (120-168)||(50911419-50911467)
[»] chr3 (40 HSPs)
chr3 (78-168)||(42329054-42329144)
chr3 (63-170)||(33942704-33942811)
chr3 (57-167)||(14633362-14633472)
chr3 (63-167)||(32428744-32428848)
chr3 (61-168)||(46412469-46412576)
chr3 (89-168)||(30191664-30191743)
chr3 (88-167)||(40465593-40465672)
chr3 (85-167)||(47760896-47760978)
chr3 (63-167)||(37268046-37268150)
chr3 (63-168)||(34470240-34470345)
chr3 (64-168)||(10054248-10054352)
chr3 (63-167)||(37718034-37718138)
chr3 (38-142)||(44926798-44926902)
chr3 (65-137)||(49275330-49275402)
chr3 (63-168)||(13907-14012)
chr3 (60-142)||(30194462-30194543)
chr3 (63-168)||(11377181-11377286)
chr3 (83-167)||(11379741-11379825)
chr3 (63-167)||(49272720-49272824)
chr3 (91-171)||(52560278-52560358)
chr3 (61-104)||(12980-13023)
chr3 (84-171)||(30715870-30715957)
chr3 (120-167)||(48098158-48098205)
chr3 (92-142)||(42321744-42321794)
chr3 (84-142)||(46415195-46415253)
chr3 (63-168)||(34472872-34472977)
chr3 (83-168)||(51014412-51014497)
chr3 (61-170)||(51017215-51017323)
chr3 (92-172)||(10036821-10036900)
chr3 (63-131)||(44929395-44929463)
chr3 (63-167)||(51014251-51014355)
chr3 (85-168)||(12515298-12515381)
chr3 (120-167)||(21196417-21196464)
chr3 (120-167)||(47642790-47642837)
chr3 (92-179)||(51545229-51545316)
chr3 (120-166)||(21196602-21196648)
chr3 (84-170)||(38108769-38108855)
chr3 (85-167)||(44846956-44847038)
chr3 (61-167)||(55146562-55146668)
chr3 (114-167)||(37459728-37459781)
[»] chr8 (17 HSPs)
chr8 (38-167)||(8036250-8036379)
chr8 (63-171)||(43610575-43610683)
chr8 (58-163)||(19243126-19243231)
chr8 (58-163)||(19316310-19316415)
chr8 (63-167)||(26702856-26702961)
chr8 (61-169)||(38032144-38032252)
chr8 (43-166)||(26488452-26488573)
chr8 (92-167)||(42167150-42167225)
chr8 (117-167)||(26701829-26701879)
chr8 (63-168)||(41362981-41363086)
chr8 (120-167)||(27641530-27641577)
chr8 (85-172)||(33073672-33073759)
chr8 (121-171)||(40494113-40494163)
chr8 (121-166)||(20495566-20495611)
chr8 (91-168)||(23231305-23231382)
chr8 (114-170)||(44119429-44119485)
chr8 (91-167)||(45120728-45120804)
[»] chr5 (23 HSPs)
chr5 (63-167)||(36348567-36348670)
chr5 (63-167)||(1696657-1696760)
chr5 (84-168)||(42346438-42346522)
chr5 (61-142)||(1690382-1690463)
chr5 (63-167)||(4722332-4722436)
chr5 (61-142)||(36351232-36351312)
chr5 (63-160)||(26752176-26752273)
chr5 (92-168)||(43297770-43297846)
chr5 (63-166)||(11356360-11356462)
chr5 (64-167)||(26747694-26747797)
chr5 (63-169)||(4724927-4725032)
chr5 (71-170)||(6556705-6556805)
chr5 (114-170)||(10827089-10827145)
chr5 (92-167)||(5124458-5124533)
chr5 (120-167)||(41088082-41088129)
chr5 (120-169)||(16930209-16930258)
chr5 (85-168)||(11822201-11822284)
chr5 (120-167)||(17646638-17646685)
chr5 (61-167)||(19870452-19870558)
chr5 (117-168)||(23067691-23067742)
chr5 (117-167)||(19877095-19877145)
chr5 (61-111)||(37979881-37979931)
chr5 (83-167)||(7486582-7486666)
[»] chr1 (34 HSPs)
chr1 (63-167)||(12792268-12792372)
chr1 (63-168)||(17684489-17684594)
chr1 (62-167)||(35585103-35585208)
chr1 (89-167)||(46191749-46191827)
chr1 (63-168)||(28865867-28865972)
chr1 (65-170)||(35574464-35574568)
chr1 (83-167)||(15356356-15356440)
chr1 (61-167)||(23344437-23344543)
chr1 (63-168)||(39855425-39855530)
chr1 (61-168)||(23341434-23341541)
chr1 (61-136)||(35184147-35184222)
chr1 (92-167)||(37780007-37780082)
chr1 (63-168)||(24271343-24271448)
chr1 (63-151)||(48138670-48138758)
chr1 (61-167)||(50915310-50915416)
chr1 (63-168)||(7407437-7407542)
chr1 (63-168)||(38043385-38043490)
chr1 (90-167)||(49263875-49263952)
chr1 (63-167)||(17687327-17687431)
chr1 (78-142)||(35587934-35587998)
chr1 (84-168)||(36354546-36354630)
chr1 (61-109)||(49259922-49259970)
chr1 (129-167)||(7402843-7402881)
chr1 (59-165)||(35186906-35187011)
chr1 (87-164)||(18239454-18239531)
chr1 (63-140)||(37777241-37777316)
chr1 (87-171)||(45471400-45471484)
chr1 (121-168)||(12789644-12789691)
chr1 (63-145)||(48139383-48139465)
chr1 (114-171)||(27109104-27109161)
chr1 (114-167)||(31385308-31385361)
chr1 (38-70)||(12792217-12792249)
chr1 (128-168)||(34815692-34815732)
chr1 (63-167)||(38047411-38047515)
[»] chr2 (17 HSPs)
chr2 (61-167)||(44074279-44074385)
chr2 (63-168)||(6978754-6978859)
chr2 (58-167)||(24108408-24108517)
chr2 (63-167)||(6975962-6976066)
chr2 (61-167)||(23719308-23719414)
chr2 (61-167)||(24106980-24107086)
chr2 (92-169)||(4425017-4425093)
chr2 (74-167)||(44037854-44037946)
chr2 (92-167)||(27131346-27131421)
chr2 (120-167)||(31297640-31297687)
chr2 (85-169)||(31500778-31500862)
chr2 (117-169)||(34522715-34522767)
chr2 (120-167)||(31298850-31298897)
chr2 (63-169)||(10361126-10361231)
chr2 (63-168)||(5422253-5422357)
chr2 (120-164)||(3259875-3259919)
chr2 (38-70)||(37313290-37313322)
[»] chr7 (13 HSPs)
chr7 (63-169)||(2206246-2206352)
chr7 (73-137)||(47943282-47943346)
chr7 (73-137)||(47948712-47948776)
chr7 (63-169)||(1299044-1299150)
chr7 (63-171)||(2204014-2204122)
chr7 (117-168)||(47863780-47863831)
chr7 (117-169)||(1295943-1295994)
chr7 (92-172)||(4997152-4997232)
chr7 (63-167)||(20708207-20708311)
chr7 (63-167)||(20876251-20876355)
chr7 (61-167)||(10555046-10555152)
chr7 (83-168)||(17185122-17185207)
chr7 (85-142)||(45414282-45414338)
[»] chr6 (6 HSPs)
chr6 (63-165)||(22868378-22868480)
chr6 (63-166)||(12398717-12398820)
chr6 (85-168)||(5620753-5620836)
chr6 (87-168)||(31860708-31860789)
chr6 (85-167)||(29268380-29268462)
chr6 (61-168)||(5613794-5613901)
[»] scaffold0589 (3 HSPs)
scaffold0589 (83-168)||(1385-1470)
scaffold0589 (38-70)||(1510-1542)
scaffold0589 (92-172)||(5547-5627)
[»] scaffold0769 (1 HSPs)
scaffold0769 (117-169)||(751-803)
[»] scaffold0004 (2 HSPs)
scaffold0004 (120-167)||(130565-130612)
scaffold0004 (120-168)||(127203-127251)
[»] scaffold0325 (1 HSPs)
scaffold0325 (63-167)||(2813-2917)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 11284370 - 11284219
Alignment:
Q  38 tgaatatatcacgaacaccacgacagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaatag 137  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  |||||||||    
T  11284370 tgaatatatcacgaacacaacgacagttaactgtcggcgcttagactaacggttgttaactgccgctggagataaaaacgtcatttacttatgtcaatag 11284271  T
Q  138 gaagtttcctatgtcagaaaagcaattttctaatatttatgtgtgtggtgat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11284270 gaagtttcctatgtcagaaaagcaattttctaatatttatgtgtgtggtgat 11284219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 17931025 - 17931129
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| |||||||||  | ||||||||||||||| |||||| ||||||  | | ||||||| |||||||||||||||||||||||||||||||||||    
T  17931025 gttaactgccggcgcttatcccaacggttgttaactgtcgctgggggtaaatgcatcatttacttgtgtcaataggaagtttcctatgtcagaaaagcaa 17931124  T
Q  163 ttttc 167  Q
    |||||    
T  17931125 ttttc 17931129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 45936709 - 45936605
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| || ||| ||| |||||||| ||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||    
T  45936709 gttaactgccgacgcgtagcctaacggtagttaaatgccgctgg-ggtaaaaacgtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaa 45936611  T
Q  163 ttttct 168  Q
    ||||||    
T  45936610 ttttct 45936605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 43890351 - 43890455
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||| |||  ||||||||||||||||||||||| ||||||| ||| ||||||| | ||||||||||||| | |||||||  ||||||||    
T  43890351 gttaactgtcggcgcataggataacggttgttaactgccgctgggggtaaaagcgtcatttacttgagtcaataggaagtattctatgtccaaaaagcaa 43890450  T
Q  163 ttttc 167  Q
    |||||    
T  43890451 ttttc 43890455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 21168523 - 21168417
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    |||||||||| || ||| ||| |||||||||||||||| | | ||| ||||||| ||| ||||||| ||||||||||||||| | |||||||||||||||    
T  21168523 cagttaactgccgacgcatagcctaacggttgttaactactgttgggggtaaaagcgtcatttacttgtgtcaataggaagtattctatgtcagaaaagc 21168424  T
Q  161 aattttc 167  Q
    |||||||    
T  21168423 aattttc 21168417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 43887537 - 43887432
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| || ||| |||  |||||||||||||||||||||||| ||||||   | |||||||  |||||||||||||||| ||||||||||||| |||    
T  43887537 gttaactgccgacgcatagcataacggttgttaactgccgctggatgtaaaagtatcatttacttttgtcaataggaagttttctatgtcagaaaaacaa 43887438  T
Q  163 ttttct 168  Q
    ||||||    
T  43887437 ttttct 43887432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 49792918 - 49792999
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||| ||| ||| ||| ||||||| |||||||||||||||    
T  49792918 cagttaactgtcggcgcatagcctaactgttgttaactgccgctgggggtgaaagcgtcatttacttgtgtcaataggaagt 49792999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 20902487 - 20902562
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||||||| ||||||||||||| || |||||||  |||||||||||||| | ||||||||||||||||||||||    
T  20902487 gttaactgccactggaggtaaaaatgtcatttacttatgtcaataggaagtattctatgtcagaaaagcaattttc 20902562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 32719238 - 32719343
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||| |||||||| ||  ||||||||||||||| |||||||| || ||  | |||| ||||| ||||||||||||| ||||||| |||| ||||||||    
T  32719238 gttaacggtcggcgcataagctaacggttgttaacagccgctgggggcaattatgtaaattacttgtgtcaataggaattttcctacgtcaaaaaagcaa 32719337  T
Q  163 ttttct 168  Q
    ||||||    
T  32719338 ttttct 32719343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 36774747 - 36774642
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||| ||| ||| |||||||  ||||||||||||||||||||||| | | ||||||  ||||||||||||||| | |  ||||| |||| |||    
T  36774747 gttaactgtcgacgcatagtctaacggcagttaactgccgctggaggtaaaagcatcatttacctgtgtcaataggaagtattcattgtcaaaaaaacaa 36774648  T
Q  163 ttttct 168  Q
    ||||||    
T  36774647 ttttct 36774642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 51029552 - 51029657
Alignment:
Q  62 agttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagca 161  Q
    |||||||||||||||  | | ||||||   ||||||||||| ||| | |||||  || ||||||| ||||||||||||||| | ||||||||||||||||    
T  51029552 agttaactgtcggcgtattgcctaacgacagttaactgccgttggggataaaagagtcatttacttgtgtcaataggaagtattctatgtcagaaaagca 51029651  T
Q  162 attttc 167  Q
    ||||||    
T  51029652 attttc 51029657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 51026095 - 51025987
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    |||||||||| |||||| | | |||||||||||||||||||||||||||        ||| ||||| ||||||||||||||| | |||||||| ||||||    
T  51026095 cagttaactgccggcgcatggtctaacggttgttaactgccgctggaggctttttgataaattacttgtgtcaataggaagtattctatgtcaaaaaagc 51025996  T
Q  161 aattttcta 169  Q
    |||||||||    
T  51025995 aattttcta 51025987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 2774965 - 2775040
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||| ||||||||||||| ||| ||||||| ||||||||||  | | | ||||||||||||||||||||||    
T  2774965 gttaactgctgctggaggtaaaagcgtcatttacttgtgtcaatagagaatattctatgtcagaaaagcaattttc 2775040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 25762018 - 25761945
Alignment:
Q  93 ttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaa 170  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||| || |   |||||||||||||||||||||||||    
T  25762018 ttaactgccgctg-aggtaaaaacgtcatttacttgtgtcaatagcaatt---ctatgtcagaaaagcaattttctaa 25761945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 49790692 - 49790617
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||| ||||  |||||||  || ||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  49790692 gttaactgctgctgagggtaaaagtgtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 49790617  T

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Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 2332839 - 2332757
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||||||||||  ||||||||||||||||||| ||||| |  |||||||||||||| | |  ||||| |||||||||||||    
T  2332839 aacggttgttaacaaccgctggaggtaaaaacgtcatttatttatgtcaataggaagtattcattgtcaaaaaagcaattttc 2332757  T

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Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 2772361 - 2772280
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    |||||||||| | |||| ||  |||||||||||||||||||| |||||||||||  || |||||||  ||||||||||||||    
T  2772361 cagttaactgcctgcgcataacctaacggttgttaactgccgttggaggtaaaagtgtcatttacttctgtcaataggaagt 2772280  T

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Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 50910304 - 50910227
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||||||||||||| ||| ||||||||| | ||||||| ||||||||| |||||||   |||||| ||||||||    
T  50910304 aacggttgttaactgccgttgggggtaaaaacttcatttacttgtgtcaatatgaagtttttgatgtcaaaaaagcaa 50910227  T

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Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 10466608 - 10466537
Alignment:
Q  99 gccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaa 170  Q
    |||||||| ||||||| ||| ||||||| ||||||||||||||| | |  ||||| ||||||||||||||||    
T  10466608 gccgctgggggtaaaagcgtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaattttctaa 10466537  T

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Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 22436141 - 22436038
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| |||||| ||| |||||||  |||||||||||||||||| |   | ||| |||||| ||||| || |||| ||| | |||||||||||||||    
T  22436141 gttaactgccggcgcatagtctaacggcagttaactgccgctggaggcatttaagtattttacttgtgtcgattggaacttttcaatgtcagaaaagcaa 22436042  T
Q  163 tttt 166  Q
    ||||    
T  22436041 tttt 22436038  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 167
Target Start/End: Complemental strand, 32715308 - 32715269
Alignment:
Q  128 gtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  32715308 gtgtcaataggaagtttcctatgtcaaaaaagcaattttc 32715269  T

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Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 36390860 - 36390781
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    |||||||| |||||| | | |||| ||  ||||||||||| ||| ||||||||||| ||||||| |||||||||||||||    
T  36390860 gttaactgccggcgcattgcctaatggcagttaactgccgttgggggtaaaaacgtcatttacttgtgtcaataggaagt 36390781  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 1593823 - 1593906
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttcta 169  Q
    ||||| |||||||||||||||| || ||  |  ||||||||| |||||| |  ||||||| ||||||||||||||||||||||||    
T  1593823 aacggctgttaactgccgctgg-ggcaattatataatttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttcta 1593906  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 38193411 - 38193363
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    ||||||| ||||||||||||||| | |||||||||||||| ||||||||    
T  38193411 atttacttgtgtcaataggaagtattctatgtcagaaaagtaattttct 38193363  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 12024551 - 12024500
Alignment:
Q  117 gtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||||||| ||||||||||||||||| |  |||||||||| |||||||||    
T  12024551 gtaatttacttgtgtcaataggaagttttcattgtcagaaaatcaattttct 12024500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 40732465 - 40732512
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||| ||||||||||||||| | ||||||||||||| ||||||||    
T  40732465 atttacttgtgtcaataggaagtattctatgtcagaaaaacaattttc 40732512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 22438573 - 22438659
Alignment:
Q  83 ctaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttcta 169  Q
    |||||| | ||||||| ||||||| ||||   | ||| |||||| |||||||||||||  ||||| ||||| |||||||||||||||    
T  22438573 ctaacgatagttaactaccgctgggggtatttatgtattttacttgtgtcaataggaacattcctttgtcaaaaaagcaattttcta 22438659  T

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Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 47658353 - 47658422
Alignment:
Q  83 ctaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtca 153  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||  | ||||||| |||| | ||||||||    
T  47658353 ctaacggttgttaactgccgctgga-gtaaaagcgtcatttacttatatcaatagaaagtattctatgtca 47658422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 2567360 - 2567255
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||| ||| | | || ||||  ||||||||||||||||| |||||  || ||||| | ||||||||||||||| | |  ||||| |||| |||    
T  2567360 gttaactgtcgacgcattgcctcacggcagttaactgccgctggagataaaagtgtcatttatttgtgtcaataggaagtattcattgtcaaaaaaacaa 2567261  T
Q  163 ttttct 168  Q
    ||||||    
T  2567260 ttttct 2567255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 46513814 - 46513749
Alignment:
Q  84 taacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctat 149  Q
    |||| |||||||||| ||  ||| ||||||| ||| ||||||| |||| |||||||||||||||||    
T  46513814 taacagttgttaactaccattgggggtaaaagcgtcatttacttgtgttaataggaagtttcctat 46513749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 47873689 - 47873742
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaa 114  Q
    |||||||||| | |||| | | |||||||||||||||||||||||| |||||||    
T  47873689 cagttaactgccagcgcatggcctaacggttgttaactgccgctgggggtaaaa 47873742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 43890298 - 43890330
Alignment:
Q  38 tgaatatatcacgaacaccacgacagttaactg 70  Q
    |||||||||||||||||| ||||||||||||||    
T  43890298 tgaatatatcacgaacacaacgacagttaactg 43890330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 48093331 - 48093263
Alignment:
Q  74 gcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    |||||||| ||||| || ||||||| |||||||| ||||||  |  ||||||| |||||||||||||||    
T  48093331 gcgcttaggctaacagtggttaactaccgctggaagtaaaagtgacatttacttgtgtcaataggaagt 48093263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 50911419 - 50911467
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    ||||||| |||||||||| |||||  | |||||||||||||||||||||    
T  50911419 atttacttgtgtcaatagaaagttatcaatgtcagaaaagcaattttct 50911467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 42329054 - 42329144
Alignment:
Q  78 ttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    ||||||||||| ||||||||||||||||  ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42329054 ttagactaacgattgttaactgccgctgagggtaaaaacgtcatttacttgtgtcaataggaagtttcctatgtcagaaaagcaattttct 42329144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 33942704 - 33942811
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||| || ||  | |||| ||||| |||||||||||||||||||||||||| ||||||||    
T  33942704 gttaactgtcggcgcttaggctaacggctgttaactgccgttgggggcaattatgtaaattacttgtgtcaataggaagtttcctatgtcacaaaagcaa 33942803  T
Q  163 ttttctaa 170  Q
    ||||||||    
T  33942804 ttttctaa 33942811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 14633362 - 14633472
Alignment:
Q  57 acgacagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaa 156  Q
    ||||||||||||||||||||| |||  ||||||||||||| ||||||||| |||||||  || ||||||| ||||||||||||||| | |||||||||||    
T  14633362 acgacagttaactgtcggcgcatagcttaacggttgttaattgccgctgggggtaaaagtgtcatttacttgtgtcaataggaagtattctatgtcagaa 14633461  T
Q  157 aagcaattttc 167  Q
    || ||||||||    
T  14633462 aaacaattttc 14633472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 32428744 - 32428848
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||||||||||||||  |||||||||||||||| |||||| || ||  | |||| |||||  |||||||||||||||| |||||||||||||||||    
T  32428744 gttaactgtcggcgcttagtttaacggttgttaactgtcgctgggggcaattatgtaaattacttatgtcaataggaagttttctatgtcagaaaagcaa 32428843  T
Q  163 ttttc 167  Q
    |||||    
T  32428844 ttttc 32428848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 46412576 - 46412469
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    ||||||||||| |||||  || |||| |||| |||||||||||||| | ||||| ||| ||||||| ||||||||||||||| | |||||||||||||||    
T  46412576 cagttaactgtaggcgcacagcctaagggttattaactgccgctggggataaaagcgtcatttacttgtgtcaataggaagtattctatgtcagaaaagc 46412477  T
Q  161 aattttct 168  Q
    ||||||||    
T  46412476 aattttct 46412469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 30191743 - 30191664
Alignment:
Q  89 gttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||||||| ||||||| ||||||| ||| ||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  30191743 gttgttaactaccgctgggggtaaaagcgtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttct 30191664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 40465672 - 40465593
Alignment:
Q  88 ggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||||||||||||| |||||||  || ||||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  40465672 ggttgttaactgccgctgggggtaaaagtgtcatttacttgtgtcaataggaagttttctatgtcagaaaaacaattttc 40465593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 47760896 - 47760978
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||||||||||| |||||| |||||||| ||| ||||||| || |||||||||||| | ||||||||||||||||||||||    
T  47760896 aacggttgttaactaccgctgaaggtaaaagcgtcatttacttgtatcaataggaagtattctatgtcagaaaagcaattttc 47760978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 37268046 - 37268150
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||||||| |||||||| ||||||| |||||| |||||||| ||| |||||||  |||||||||||||| | |  ||||| ||| ||||    
T  37268046 gttaactgtcggcgcttaggctaacggtggttaactaccgctgaaggtaaaagcgtcatttacttatgtcaataggaagtattcattgtcaaaaatgcaa 37268145  T
Q  163 ttttc 167  Q
    |||||    
T  37268146 ttttc 37268150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 34470345 - 34470240
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||| ||| || ||||  ||||||||||||||| ||||||| ||| ||||||| ||||||||||||||| | |  ||||| ||||| ||    
T  34470345 gttaactgtcggcgcatagcctgacggcagttaactgccgctgggggtaaaagcgtcatttacttgtgtcaataggaagtattcattgtcaaaaaagaaa 34470246  T
Q  163 ttttct 168  Q
    ||||||    
T  34470245 ttttct 34470240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 10054248 - 10054352
Alignment:
Q  64 ttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaat 163  Q
    ||||||||||| ||  || |||||||  ||||||||| | | | ||||||||||| ||||||| |||| |||||||||| | ||||||||||||||||||    
T  10054248 ttaactgtcggtgcacagcctaacggcagttaactgctgttaggggtaaaaacgtcatttacttgtgttaataggaagtattctatgtcagaaaagcaat 10054347  T
Q  164 tttct 168  Q
    |||||    
T  10054348 tttct 10054352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 37718034 - 37718138
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||| ||| |||||||||| |||||||  ||||||| ||||||||||||||| ||| ||||||| ||||||||||||||| | |  ||||  ||||||||    
T  37718034 gttatctgccggcgcttaggctaacggcggttaactaccgctggaggtaaaagcgtcatttacttgtgtcaataggaagtattcgttgtcgaaaaagcaa 37718133  T
Q  163 ttttc 167  Q
    |||||    
T  37718134 ttttc 37718138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 44926902 - 44926798
Alignment:
Q  38 tgaatatatcacgaacaccacgacagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaatag 137  Q
    |||||||||||||||||| ||| |||||||||  |||||| |   |||||||  ||||||||||||| | || |||||||| ||||||| ||||||||||    
T  44926902 tgaatatatcacgaacacaacggcagttaactaccggcgcatttcctaacggcagttaactgccgctaggggcaaaaacgtcatttacttgtgtcaatag 44926803  T
Q  138 gaagt 142  Q
    |||||    
T  44926802 gaagt 44926798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 49275330 - 49275402
Alignment:
Q  65 taactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaatag 137  Q
    ||||||||||||| ||| |||||||| |||||||| || ||||||||||||||| ||||| | ||||||||||    
T  49275330 taactgtcggcgcatagcctaacggtagttaactgtcgttggaggtaaaaacgtcatttatttgtgtcaatag 49275402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 13907 - 14012
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaatagg-aagtttcctatgtcagaaaagca 161  Q
    ||||| ||||||||| | | ||||||||||||||||||||||||||| |  ||| || |||||| ||||||||||| ||||||| | ||| | |||||||    
T  13907 gttaagtgtcggcgcatggcctaacggttgttaactgccgctggaggcattaacatattttacttgtgtcaataggaaagtttcat-tgttaaaaaagca 14005  T
Q  162 attttct 168  Q
    |||||||    
T  14006 attttct 14012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 30194462 - 30194543
Alignment:
Q  60 acagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    ||||||||||  |||||| | | ||||| |||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||    
T  30194462 acagttaactaacggcgcatggcctaacagttgttaactgccgctgg-ggtaaaagcgtcatttacttgtgtcaataggaagt 30194543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 11377286 - 11377181
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||| | | |||||||  ||||||||||||||| |||||||  || ||||||| |||||||||| |||| | |  ||||  ||||||||    
T  11377286 gttaactgtcggcgcattgcctaacggcagttaactgccgctgggggtaaaagtgtcatttacttgtgtcaatagaaagtattcattgtcgaaaaagcaa 11377187  T
Q  163 ttttct 168  Q
    ||||||    
T  11377186 ttttct 11377181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 11379741 - 11379825
Alignment:
Q  83 ctaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||||  |||||| |||| |||  |||||| ||| ||||||| |||||||||| |||| | ||||||||||||||||||||||    
T  11379741 ctaacggcagttaaccgccgttgggagtaaaagcgtcatttacttgtgtcaatagaaagtattctatgtcagaaaagcaattttc 11379825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 49272824 - 49272720
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| ||| || ||| |||| ||  ||||||||||||||| | ||||| ||| ||||||| ||||||||||||||| | |||||  |||||| |||    
T  49272824 gttaactgccggtgcatagcctaatggcagttaactgccgctggggataaaagcgtcatttacttgtgtcaataggaagtattctatgctagaaaaacaa 49272725  T
Q  163 ttttc 167  Q
    |||||    
T  49272724 ttttc 49272720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 52560358 - 52560278
Alignment:
Q  91 tgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaat 171  Q
    ||||||||||||||||||| |   ||||| |||||| |||||||||||||| || |  ||||| |||||||||||||||||    
T  52560358 tgttaactgccgctggaggcatttacgtattttacttgtgtcaataggaaggtttcattgtcaaaaaagcaattttctaat 52560278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 13023 - 12980
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgct 104  Q
    |||||||||| |||||||||| ||||||||||||||||||||||    
T  13023 cagttaactgccggcgcttaggctaacggttgttaactgccgct 12980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 30715957 - 30715870
Alignment:
Q  84 taacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaat 171  Q
    ||||||| ||||||| ||||||| ||||   | ||| |||||| ||||||||||||| |||| | ||||| |||||||||||||||||    
T  30715957 taacggtagttaactaccgctgggggtatttatgtattttacttgtgtcaataggaactttcatttgtcaaaaaagcaattttctaat 30715870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 48098158 - 48098205
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  48098158 atttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 48098205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 42321794 - 42321744
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    ||||||||||||||| ||||||||| | ||||||| |||||||||||||||    
T  42321794 gttaactgccgctgggggtaaaaacatcatttacttgtgtcaataggaagt 42321744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 46415195 - 46415253
Alignment:
Q  84 taacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    ||||||||||||||||||||||  ||||||||  | ||||||| |||||||||||||||    
T  46415195 taacggttgttaactgccgctgagggtaaaaatatcatttacttgtgtcaataggaagt 46415253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 34472872 - 34472977
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| |||||| ||| ||||||   |||||||| ||||||  |||||||||| ||||||| || ||||||  |||| | || ||| ||||||||||    
T  34472872 gttaactgccggcgcatagcctaacgacagttaactgtcgctgggagtaaaaacgtcatttacttgtatcaataaaaagtattctctgttagaaaagcaa 34472971  T
Q  163 ttttct 168  Q
    ||||||    
T  34472972 ttttct 34472977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 51014497 - 51014412
Alignment:
Q  83 ctaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    ||||| ||||||||||| |||||  | ||||||||| ||||||| ||||||||||||||| |  ||| | |||||| |||||||||    
T  51014497 ctaacagttgttaactgtcgctgatgataaaaacgtcatttacttgtgtcaataggaagtattttatttaagaaaaacaattttct 51014412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 51017215 - 51017323
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    |||||||||| |||||| | | ||||||||||||||||| || ||| ||||||| ||| || | || | ||||||||||||| | |  ||||| ||||||    
T  51017215 cagttaactggcggcgcatggtctaacggttgttaactgtcgttgg-ggtaaaagcgtcatattcttgcgtcaataggaagtattcattgtcaaaaaagc 51017313  T
Q  161 aattttctaa 170  Q
    ||||||||||    
T  51017314 aattttctaa 51017323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 10036900 - 10036821
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaata 172  Q
    ||||||||||||||| |||||||  || ||||||| ||||||||||||||| | |  ||||| ||||||||||||| ||||    
T  10036900 gttaactgccgctgg-ggtaaaagagtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaattttcaaata 10036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 44929395 - 44929463
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgt 131  Q
    |||||||| |||||| | | ||||||||||||||||||||| ||||| ||||| || ||||||| ||||    
T  44929395 gttaactgccggcgcatggcctaacggttgttaactgccgccggaggcaaaaatgtcatttacttgtgt 44929463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 51014251 - 51014355
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| |||||| ||| |||||||  ||||| ||||||||| || |   | ||| |||||| |||||||| |||| ||| | |||||||||||||||    
T  51014251 gttaactgccggcgcatagcctaacggcagttaattgccgctgggggcatttaggtattttacttgtgtcaattggaacttttcaatgtcagaaaagcaa 51014350  T
Q  163 ttttc 167  Q
    |||||    
T  51014351 ttttc 51014355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 12515298 - 12515381
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    ||||| |||||||||| ||||| |  | ||||||| |||||| |||||  || ||||||| |||||||| ||||||||||||||    
T  12515298 aacggctgttaactgctgctggggacataaacgtattttacttgtgtctttatgaagttttctatgtcaaaaaagcaattttct 12515381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 21196464 - 21196417
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||| ||||||||||||| | | ||||||||||||||||||||||    
T  21196464 atttacttgtgtcaataggaaatattctatgtcagaaaagcaattttc 21196417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 47642790 - 47642837
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||| |||| |||||||||| | ||||||||||||||||||||||    
T  47642790 atttacttgtgttaataggaagtattctatgtcagaaaagcaattttc 47642837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 51545316 - 51545229
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaatatttatgt 179  Q
    ||||||||| ||||| || ||  | |||| ||||| |||||| |  ||||||| ||||||||||||||||||||||||| || |||||    
T  51545316 gttaactgctgctgggggcaattatgtaaattacttgtgtcattgtgaagttttctatgtcagaaaagcaattttctaaaatatatgt 51545229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 21196602 - 21196648
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaatttt 166  Q
    ||||||| ||||||||||||||| | |||||||| ||||||||||||    
T  21196602 atttacttgtgtcaataggaagtattctatgtcaaaaaagcaatttt 21196648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 38108855 - 38108769
Alignment:
Q  84 taacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaa 170  Q
    ||||||| ||||||| ||||||||||||   | ||| |||||| ||||||||||||| |||    ||||| ||||||||||||||||    
T  38108855 taacggtagttaactaccgctggaggtatttaagtattttacttgtgtcaataggaactttttattgtcaaaaaagcaattttctaa 38108769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 44847038 - 44846956
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||| ||||||| ||||||||||||   | ||| |||||| |||| |||  ||||||| | ||||||||||||||||||||    
T  44847038 aacggtagttaactaccgctggaggtatttaagtattttacttgtgttaatgtgaagttttcaatgtcagaaaagcaattttc 44846956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 55146668 - 55146562
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    |||||||||| |||||||| || ||||||| |||||||  || ||| ||||   | ||| |||| | ||||||||||||| |||||| | ||| ||||||    
T  55146668 cagttaactgccggcgctttgaataacggtagttaactatcgttgggggtatttatgtattttaattgtgtcaataggaactttcctttttcaaaaaagc 55146569  T
Q  161 aattttc 167  Q
    |||||||    
T  55146568 aattttc 55146562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 37459781 - 37459728
Alignment:
Q  114 aacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||| ||||||| ||||||||  ||||||| |||||||| |||||||||||||    
T  37459781 aacgtgatttacttgtgtcaatgtgaagttttctatgtcaaaaaagcaattttc 37459728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 8036379 - 8036250
Alignment:
Q  38 tgaatatatcacgaacaccacgacagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaatag 137  Q
    ||||||||||||||| || ||| ||||||| ||||||||| | | |||| ||  ||||||||||| ||| ||||||| ||| ||||||| ||||||||||    
T  8036379 tgaatatatcacgaatacaacggcagttaagtgtcggcgcattgcctaatggcagttaactgccgttgggggtaaaagcgtcatttacttgtgtcaatag 8036280  T
Q  138 gaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||| | ||||||||||||||||||||||    
T  8036279 gaagtattctatgtcagaaaagcaattttc 8036250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 43610683 - 43610575
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||||||||||||||||||||||||||||||||||||||     ||  | |||| ||||| |||  ||||||||||||||||||||||||||||||    
T  43610683 gttaactgtcggcgcttagactaacggttgttaactgccgctgagaacaattatgtaaattacttgtgctaataggaagtttcctatgtcagaaaagcaa 43610584  T
Q  163 ttttctaat 171  Q
    |||||||||    
T  43610583 ttttctaat 43610575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 19243126 - 19243231
Alignment:
Q  58 cgacagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaa 157  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||| ||||||||| | |||| || ||||| ||||||||| | |  ||||| |||    
T  19243126 cgacagttaactgttggcgcttagactaacgattgttaactgtcgctgggggtaaaaacatcatttccttgtgtcgataggaagtattcattgtcaaaaa 19243225  T
Q  158 agcaat 163  Q
    ||||||    
T  19243226 agcaat 19243231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 19316310 - 19316415
Alignment:
Q  58 cgacagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaa 157  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||| ||||||||| | |||| || ||||| ||||||||| | |  ||||| |||    
T  19316310 cgacagttaactgttggcgcttagactaacgattgttaactgtcgctgggggtaaaaacatcatttccttgtgtcgataggaagtattcattgtcaaaaa 19316409  T
Q  158 agcaat 163  Q
    ||||||    
T  19316410 agcaat 19316415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 26702856 - 26702961
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgct-ggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagca 161  Q
    |||||||||||||| |||| ||||||||||||||||||| || || || ||  | |||| ||||| |||||||||||||||||||||||||| ||||  |    
T  26702856 gttaactgtcggcgtttaggctaacggttgttaactgccactggggggcaattatgtaaattacttgtgtcaataggaagtttcctatgtcaaaaaataa 26702955  T
Q  162 attttc 167  Q
    ||||||    
T  26702956 attttc 26702961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 38032252 - 38032144
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| ||       |||| ||||| ||||||||||||| | | |||||||| ||| ||    
T  38032252 cagttaactgtcggcgcatagcctaacggttgttaactgccgctgggggctttttggtaaattacttgtgtcaataggaaatattctatgtcaaaaaggc 38032153  T
Q  161 aattttcta 169  Q
    |||||||||    
T  38032152 aattttcta 38032144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 26488452 - 26488573
Alignment:
Q  43 atatcacgaacaccacgacagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    ||||||||||||| ||| ||||||||||||||||| | | |||||||  |||||||| || ||| ||||||||||| |||||||  |||||||| |||||    
T  26488452 atatcacgaacacaacggcagttaactgtcggcgcattgcctaacgg-cgttaactgtcgttgg-ggtaaaaacgtcatttacttatgtcaatatgaagt 26488549  T
Q  143 ttcctatgtcagaaaagcaatttt 166  Q
     | |  ||||| ||||||||||||    
T  26488550 attcattgtcaaaaaagcaatttt 26488573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 42167225 - 42167150
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||||| | |  ||||| |||| ||||||||    
T  42167225 gttaactgccgctggaggtaaaagcgtcatttacttgtgtcaataggaagtattcattgtcaaaaaaccaattttc 42167150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 26701879 - 26701829
Alignment:
Q  117 gtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||||||    
T  26701879 gtaaattacttgtgtcaataggaagtttcctatgtcaaaaaagcaattttc 26701829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 41363086 - 41362981
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||| | | ||||| |   ||||||| || ||| ||||||| ||| ||||||| ||||||||||||||| |  |||||||||||| |||    
T  41363086 gttaactgtcggcgcattgcctaacagcatttaactgtcgttgggggtaaaagcgtcatttacttgtgtcaataggaagtattttatgtcagaaaaacaa 41362987  T
Q  163 ttttct 168  Q
    ||||||    
T  41362986 ttttct 41362981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 27641577 - 27641530
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||| |||||||||| |||| | ||||||||||||||||||||||    
T  27641577 atttacttgtgtcaatagaaagtattctatgtcagaaaagcaattttc 27641530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 33073759 - 33073672
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaata 172  Q
    |||||||||||||  |||||||||| |   | ||| |||||| |||| | |  ||||||||||||||||||||||||| |||||||||    
T  33073759 aacggttgttaacaaccgctggaggcatttaagtattttacttgtgttattgtgaagtttcctatgtcagaaaagcaaatttctaata 33073672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 40494113 - 40494163
Alignment:
Q  121 tttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaat 171  Q
    |||||| ||||||||||||||||| |  |||||||||| ||||||||||||    
T  40494113 tttacttgtgtcaataggaagttttcattgtcagaaaatcaattttctaat 40494163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 20495566 - 20495611
Alignment:
Q  121 tttactcgtgtcaataggaagtttcctatgtcagaaaagcaatttt 166  Q
    |||||| ||||||||| ||||||| |||||||| ||||||||||||    
T  20495566 tttacttgtgtcaatacgaagttttctatgtcaaaaaagcaatttt 20495611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 23231305 - 23231382
Alignment:
Q  91 tgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||||||||||||||||  |  | |||||||||| |||||| |  ||| ||| ||||||||||||| |||||||||    
T  23231305 tgttaactgccgctggaggctattaggtaatttacttgtgtcattgtgaacttttctatgtcagaaaaacaattttct 23231382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 44119429 - 44119485
Alignment:
Q  114 aacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaa 170  Q
    ||||||||||||| ||| ||||  ||| |||| ||||||| ||||||||||||||||    
T  44119429 aacgtaatttacttgtggcaatgtgaaatttcttatgtcaaaaaagcaattttctaa 44119485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 45120728 - 45120804
Alignment:
Q  91 tgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||||||||||||| |  ||  | |||||||||| |||||| |  ||| ||| ||||||||||||||||||||||    
T  45120728 tgttaactgccgctggggacaattaagtaatttacttgtgtcattgtgaacttttctatgtcagaaaagcaattttc 45120804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 36348670 - 36348567
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||||||||||||||  ||||||||||||| ||||||||| ||||||| ||| ||||||| ||| ||||||| ||||| |||||||||||||||||    
T  36348670 gttaactgtcggcgcttaggataacggttgttaattgccgctgg-ggtaaaagcgtcatttacttgtgacaataggtagttttctatgtcagaaaagcaa 36348572  T
Q  163 ttttc 167  Q
    |||||    
T  36348571 ttttc 36348567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 1696657 - 1696760
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| |||||||||| ||||||||||||||||| ||||| | ||||||  || ||||||| ||||||||||||||||| | |||||||||||||||    
T  1696657 gttaactgccggcgcttaggctaacggttgttaactgtcgctgaaagtaaaagtgtcatttacttgtgtcaataggaagttt-caatgtcagaaaagcaa 1696755  T
Q  163 ttttc 167  Q
    |||||    
T  1696756 ttttc 1696760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 42346438 - 42346522
Alignment:
Q  84 taacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    ||||||||||||||||| |||||  |||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  42346438 taacggttgttaactgctgctgggcgtaaaagcgtcatttacttgtgtcaataagaagtttcctatgtcagaaaagcaattttct 42346522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 1690463 - 1690382
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||  | ||||||||| ||||||| |||||||||||||||    
T  1690463 cagttaactatcggcacttaggctaacggttgttaactgccgctgaggataaaaacgtcatttacttgtgtcaataggaagt 1690382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 4722436 - 4722332
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||| ||||| |||  |||||||||||||||| |||||| | |||||  || ||||||| ||||||||||||||| | ||||||||||||| |||    
T  4722436 gttaactgttggcgcatagcgtaacggttgttaactgtcgctggggataaaagtgtcatttacttgtgtcaataggaagtattctatgtcagaaaaacaa 4722337  T
Q  163 ttttc 167  Q
    |||||    
T  4722336 ttttc 4722332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 36351232 - 36351312
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    |||||||||||  | |||||||||||||| |||||||||||||||| ||||||| ||| ||||||| |||||||||||||||    
T  36351232 cagttaactgtttgtgcttagactaacggctgttaactgccgctgg-ggtaaaaccgtcatttacttgtgtcaataggaagt 36351312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 26752176 - 26752273
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||  | ||  |  ||| ||||| ||||||||||||| |||||||||||| ||||||    
T  26752176 gttaactgccggcgcttaggctaacggttgttaacggccgctgggagcaattatttaaattacttgtgtcaataggaaatttcctatgtcaaaaaagc 26752273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 43297770 - 43297846
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||||| |||||| || ||  | |||| ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  43297770 gttaactgtcgctgggggaaattatgtaaattacttgtgtcaataggaagtttcccatgtcagaaaagcaattttct 43297846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 11356462 - 11356360
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| |||||| | | |||||||  ||||||| || |||| ||||||||||| ||||||| |||||||||| |||| |  ||||||||||||||||    
T  11356462 gttaactgccggcgcattgcctaacggcagttaactaccactgg-ggtaaaaacgtcatttacttgtgtcaatagaaagtattttatgtcagaaaagcaa 11356364  T
Q  163 tttt 166  Q
    ||||    
T  11356363 tttt 11356360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 167
Target Start/End: Complemental strand, 26747797 - 26747694
Alignment:
Q  64 ttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaat 163  Q
    |||||||||||||| |   | |||||||||||||| ||||||||||       |||| ||||| |||||||||||||||||||||||||| |||||||||    
T  26747797 ttaactgtcggcgcatcttccaacggttgttaactaccgctggaggctttttagtaaattacttgtgtcaataggaagtttcctatgtcaaaaaagcaat 26747698  T
Q  164 tttc 167  Q
    ||||    
T  26747697 tttc 26747694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 4724927 - 4725032
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||| ||| ||||||||||||||||| || |||  ||||||| || |||||||  |||||||| ||| | | |||||||| ||| ||||    
T  4724927 gttaactgtcggcgcatagtctaacggttgttaactgtcgttgg-tgtaaaaatgtcatttacttatgtcaataagaaatattctatgtcaaaaatgcaa 4725025  T
Q  163 ttttcta 169  Q
    |||||||    
T  4725026 ttttcta 4725032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 6556705 - 6556805
Alignment:
Q  71 tcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc-aattttcta 169  Q
    ||||||||||| |||| ||||||||||| ||||||| |  |   | |||| ||||| |||||||||||||||||||||||||| |||| | |||||||||    
T  6556705 tcggcgcttaggctaatggttgttaacttccgctggggacagttatgtaaattacttgtgtcaataggaagtttcctatgtcaaaaaatcaaattttcta 6556804  T
Q  170 a 170  Q
    |    
T  6556805 a 6556805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 10827089 - 10827145
Alignment:
Q  114 aacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaa 170  Q
    ||||||||||||| ||||||||| ||||||||  |||||| ||||||||||||||||    
T  10827089 aacgtaatttacttgtgtcaatatgaagtttctcatgtcaaaaaagcaattttctaa 10827145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 5124458 - 5124533
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||| | ||||||||||||||||| ||||||| ||||||||| ||||    | ||||||||||||||||||||    
T  5124458 gttaactactgctggaggtaaaaacgtcatttacttgtgtcaataagaaggaatcaatgtcagaaaagcaattttc 5124533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 41088129 - 41088082
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||||    
T  41088129 atttactcgtgtcaataggaagtattctatgtcagaaaagtaattttc 41088082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 16930258 - 16930209
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttcta 169  Q
    ||||||| ||||||||||||||||| |||| || ||||||||||||||||    
T  16930258 atttacttgtgtcaataggaagttttctatatctgaaaagcaattttcta 16930209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 11822201 - 11822284
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||| ||||||| ||||||| |||| ||  | || ||||||| |||||| |  ||||||| |||||||||||||||||||||||    
T  11822201 aacgattgttaattgccgctagaggcaattatgtcatttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 11822284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 17646638 - 17646685
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||| ||||||| ||||||| | ||||||||||||||||||||||    
T  17646638 atttacttgtgtcaacaggaagtattctatgtcagaaaagcaattttc 17646685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 19870558 - 19870452
Alignment:
Q  61 cagttaactgtcggcgctt-agactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaag 159  Q
    |||||||||||||||| || ||| ||||||||||||||| |||| |  ||||   | ||| |||||| |||||||||| || |||||| ||||| |||||    
T  19870558 cagttaactgtcggcggtttaga-taacggttgttaactaccgcggagggtatttaagtattttacttgtgtcaatagtaactttcctttgtcaaaaaag 19870460  T
Q  160 caattttc 167  Q
    ||||||||    
T  19870459 caattttc 19870452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 23067691 - 23067742
Alignment:
Q  117 gtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||||||| |||||||| |||| ||| | |||||||||||||||||||||    
T  23067691 gtaatttacttgtgtcaattggaacttttcaatgtcagaaaagcaattttct 23067742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 19877095 - 19877145
Alignment:
Q  117 gtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||||||| |||||||| |||| ||| | ||||||||||||||||||||    
T  19877095 gtaatttacttgtgtcaattggaacttttcaatgtcagaaaagcaattttc 19877145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 37979931 - 37979881
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggta 111  Q
    ||||||||||||||||| | | |||||||| ||||||||||||||| ||||    
T  37979931 cagttaactgtcggcgcatggcctaacggtcgttaactgccgctgggggta 37979881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 7486582 - 7486666
Alignment:
Q  83 ctaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||| ||||||||||| || ||| ||||||| ||| ||||||| |||||||||| |||| | |  ||| | |||||||||||||    
T  7486582 ctaacagttgttaactgtcgttgggggtaaaagcgtcatttacttgtgtcaatagaaagtattcattgtaaaaaaagcaattttc 7486666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 12792268 - 12792372
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| | |  ||||| ||||||||    
T  12792268 gttaactgtcgatgcttagcctaacggttgttaactgccgctggaggtaaaaacgtcatttacttgtgtcagtaggaagtattcattgtcaaaaaagcaa 12792367  T
Q  163 ttttc 167  Q
    |||||    
T  12792368 ttttc 12792372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 17684594 - 17684489
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||| ||| |||||||||||||||||||||||  ||||||| ||| ||||||| ||||||||||||||| | |  ||||| ||||||||    
T  17684594 gttaactgtcggcgcatagcctaacggttgttaactgccgctgagggtaaaagcgtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaa 17684495  T
Q  163 ttttct 168  Q
    ||||||    
T  17684494 ttttct 17684489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 35585208 - 35585103
Alignment:
Q  62 agttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagca 161  Q
    |||||||||||||||| |||  ||||||||||||||| ||||||||||| ||||||| |||||||  | |||||||||||| | ||||||||||||| ||    
T  35585208 agttaactgtcggcgcatagcataacggttgttaactaccgctggaggttaaaacgtcatttacttatatcaataggaagtattctatgtcagaaaaaca 35585109  T
Q  162 attttc 167  Q
    ||||||    
T  35585108 attttc 35585103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 46191827 - 46191749
Alignment:
Q  89 gttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||||||||||| ||| ||||||| ||| ||||||| |||||||||||||||||| |||||||||||||||||||||    
T  46191827 gttgttaactgccgatgggggtaaaagcgtcatttacttgtgtcaataggaagtttcttatgtcagaaaagcaattttc 46191749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 28865867 - 28865972
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||||| |||||||| |||||||||||||||||||||||| | ||||| ||| |||||||  | | |||| ||||||| ||||||||||||| |||    
T  28865867 gttaactgtcagcgcttaggctaacggttgttaactgccgctggggataaaagcgtcatttacttctcttaatatgaagttttctatgtcagaaaaacaa 28865966  T
Q  163 ttttct 168  Q
    ||||||    
T  28865967 ttttct 28865972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 35574568 - 35574464
Alignment:
Q  65 taactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaatt 164  Q
    ||||||||||||| | | |||||||  ||||||||||||||| ||||||| ||| ||||||| ||||||||||||||| | |||||| ||||||||||||    
T  35574568 taactgtcggcgcattgcctaacggcagttaactgccgctgggggtaaaagcgtcatttacttgtgtcaataggaagtattctatgt-agaaaagcaatt 35574470  T
Q  165 ttctaa 170  Q
    ||||||    
T  35574469 ttctaa 35574464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 15356356 - 15356440
Alignment:
Q  83 ctaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||||| |||||||| | |||||||||||||| | ||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  15356356 ctaacggtagttaactgtcactggaggtaaaaacatcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 15356440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 23344437 - 23344543
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    |||||| |||||||||| | | |||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||| || | | |  ||||| ||||||    
T  23344437 cagttagctgtcggcgcatggcctaacggttgttaactgccgctggaggtaaaagcgtcatttacttgtgttaatagaaaatattcattgtcaaaaaagc 23344536  T
Q  161 aattttc 167  Q
    |||||||    
T  23344537 aattttc 23344543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 39855530 - 39855425
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||||||| || | | |||||||  ||||||||||||||| ||||||| ||| ||||||| ||||||||||||||| | |  ||||| ||||||||    
T  39855530 gttaactgtcggtgcattgcctaacggcagttaactgccgctgggggtaaaagcgtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaa 39855431  T
Q  163 ttttct 168  Q
    ||||||    
T  39855430 ttttct 39855425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 23341541 - 23341434
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    ||||||||||| || || | | |||||||||||||||||||| ||||||||||| | | ||||||| || |||||| ||||| |  ||||||| ||||||    
T  23341541 cagttaactgttggtgcatggcctaacggttgttaactgccgttggaggtaaaagcatcatttacttgtatcaataagaagtattatatgtcaaaaaagc 23341442  T
Q  161 aattttct 168  Q
    ||||||||    
T  23341441 aattttct 23341434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 35184222 - 35184147
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaata 136  Q
    |||||||||| |||||||||||||||| |||||||||||| |||| |||||||  ||| ||||||| |||||||||    
T  35184222 cagttaactgccggcgcttagactaacagttgttaactgctgctgaaggtaaacgcgtcatttacttgtgtcaata 35184147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 37780007 - 37780082
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||||| ||||||||||| ||| ||||||| ||||||||||||| | | ||||||||||||| ||||||||    
T  37780007 gttaactgccgttggaggtaaaagcgtcatttacttgtgtcaataggaaatattctatgtcagaaaaacaattttc 37780082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 24271343 - 24271448
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||| ||  |||||||||||||||| ||||||| | ||||||| | ||||| |  ||||||||| || | | ||||||||||||| |||    
T  24271343 gttaactgtcggcgcataatctaacggttgttaactaccgctggggataaaaacatcatttatttatgtcaatagaaattattctatgtcagaaaatcaa 24271442  T
Q  163 ttttct 168  Q
    ||||||    
T  24271443 ttttct 24271448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 48138758 - 48138670
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgt 151  Q
    |||||||| |||||||||| ||||||||| ||||||  | ||||||| ||  | |||| ||||| ||||||||||||||||||||||||    
T  48138758 gttaactgccggcgcttaggctaacggttattaactatcactggaggcaattatgtaaattacttgtgtcaataggaagtttcctatgt 48138670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 50915310 - 50915416
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    |||||||||| || ||| | | |||||||||||||||||||||||||||     | ||| |||||| |||||||| |||| ||| | |||||||||||||    
T  50915310 cagttaactgccgacgcattgcctaacggttgttaactgccgctggaggcttttaggtattttacttgtgtcaattggaacttttcaatgtcagaaaagc 50915409  T
Q  161 aattttc 167  Q
    |||||||    
T  50915410 aattttc 50915416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 7407437 - 7407542
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| | ||||| || |||||  ||||||||||||||||| || ||  |  ||| ||||| |||||||||||||||||||||||| | ||||| ||    
T  7407437 gttaactgccagcgctgaggctaacaattgttaactgccgctgggggcaattatataaattacttgtgtcaataggaagtttcctatgtgaaaaaaggaa 7407536  T
Q  163 ttttct 168  Q
    ||||||    
T  7407537 ttttct 7407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 38043490 - 38043385
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||| |   |||||||| ||||||| ||||||||||||   | ||| ||||||  |||||||||||| |||||| | ||| ||||||||    
T  38043490 gttaactgtcggcgcctttcctaacggtagttaactaccgctggaggtatttatgtattttacttctgtcaataggaactttcctttatcaaaaaagcaa 38043391  T
Q  163 ttttct 168  Q
    ||||||    
T  38043390 ttttct 38043385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 49263875 - 49263952
Alignment:
Q  90 ttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    |||||||||||||||| | ||||||  || ||||||| |||||||||| |||| | |||||| |||||||||||||||    
T  49263875 ttgttaactgccgctgaaagtaaaagtgtcatttacttgtgtcaatagaaagtattctatgtgagaaaagcaattttc 49263952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 17687327 - 17687431
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||  ||| ||||| |||||||||||||| ||  | ||||||||| ||||||| ||||||| | ||||| | |||  |||||||| |||    
T  17687327 gttaactgtcggcgtatagcctaacagttgttaactgccgttgaggataaaaacgtcatttacttgtgtcaacatgaagtattctaaatcagaaaaacaa 17687426  T
Q  163 ttttc 167  Q
    |||||    
T  17687427 ttttc 17687431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 35587934 - 35587998
Alignment:
Q  78 ttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    |||| |||||||||||||||||||| ||||||||||| ||| ||||| | |||||||||| ||||    
T  35587934 ttaggctaacggttgttaactgccgttggaggtaaaagcgtcatttatttgtgtcaatagaaagt 35587998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 36354630 - 36354546
Alignment:
Q  84 taacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||||| |||||||||| ||| | ||||| ||| ||||| |  ||| ||||||||||||||||||||| |||| |||||||||    
T  36354630 taacggttattaactgccgttggggataaaagcgtcatttatttatgttaataggaagtttcctatgtcaaaaaaacaattttct 36354546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 49259970 - 49259922
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggagg 109  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||||    
T  49259970 cagttaactgtcggcgcatggtctaacggttgttaactgccgctggagg 49259922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 7402881 - 7402843
Alignment:
Q  129 tgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  7402881 tgtcaataggaagtttcctatgtcaaaaaagcaattttc 7402843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 35186906 - 35187011
Alignment:
Q  59 gacagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaa 158  Q
    ||||||||||||| | ||| ||| |||||  || |||||||||| |  |||||||| ||| ||||||| || |||||||||||| | ||| |||||||||    
T  35186906 gacagttaactgttgacgcatagcctaacaattattaactgccgtta-aggtaaaagcgtcatttacttgtatcaataggaagtattctaagtcagaaaa 35187004  T
Q  159 gcaattt 165  Q
    |||||||    
T  35187005 gcaattt 35187011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 18239531 - 18239454
Alignment:
Q  87 cggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaatt 164  Q
    |||||||||||||||| ||| ||||     ||| |||||| ||||||||||||||||| |||||||| ||||||||||    
T  18239531 cggttgttaactgccgttgggggtattttagtattttacttgtgtcaataggaagttttctatgtcaaaaaagcaatt 18239454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 37777316 - 37777241
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaa 140  Q
    |||||||| || ||| ||| |||||||||||||||||||||||| ||||||||||| | |||||  ||||||||||||    
T  37777316 gttaactgccgacgcgtagcctaacggttgttaactgccgctgg-ggtaaaaacgtca-ttacttatgtcaataggaa 37777241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 45471484 - 45471400
Alignment:
Q  87 cggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaat 171  Q
    |||| ||||||| ||||||| || | ||||||| ||||||  ||||  || ||||||| |||||||| |||||||||||||||||    
T  45471484 cggtagttaactaccgctgggggcataaacgtattttacttatgtctttatgaagttttctatgtcaaaaaagcaattttctaat 45471400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 12789691 - 12789644
Alignment:
Q  121 tttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||| |||||| |  |||||||||||||||||||||||||||||||    
T  12789691 tttacttgtgtcattgtgaagtttcctatgtcagaaaagcaattttct 12789644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 48139383 - 48139465
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttc 145  Q
    |||||||| || ||||||| |||||||||||||||||||||| |  | ||  | |||| ||||| ||||||||| ||||||||    
T  48139383 gttaactgccgacgcttaggctaacggttgttaactgccgctaggagcaattatgtaaattacttgtgtcaatatgaagtttc 48139465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 27109104 - 27109161
Alignment:
Q  114 aacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaat 171  Q
    ||||||||||||| |||| |||  ||||||||  |||||| |||||||||||||||||    
T  27109104 aacgtaatttacttgtgtgaatgtgaagtttctcatgtcaaaaaagcaattttctaat 27109161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 31385361 - 31385308
Alignment:
Q  114 aacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||||||| ||||||||  ||||||||  |||||| |||||||||||||    
T  31385361 aacgtaatttacttgtgtcaatgtgaagtttctcatgtcaaaaaagcaattttc 31385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 12792217 - 12792249
Alignment:
Q  38 tgaatatatcacgaacaccacgacagttaactg 70  Q
    |||||||||||||||||| ||||||||||||||    
T  12792217 tgaatatatcacgaacacaacgacagttaactg 12792249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 34815692 - 34815732
Alignment:
Q  128 gtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    ||||||||||||| | | |||||||||||||||||||||||    
T  34815692 gtgtcaataggaaatattctatgtcagaaaagcaattttct 34815732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 38047411 - 38047515
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||| ||||| |||  ||||||  || |||||||||||| ||||   | ||| |||||| |||||||| | || ||| | |||||||||||||||    
T  38047411 gttaactgttggcgcatagcataacggcagtcaactgccgctgggggtatttaggtattttacttgtgtcaattgaaacttttcaatgtcagaaaagcaa 38047510  T
Q  163 ttttc 167  Q
    |||||    
T  38047511 ttttc 38047515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 44074279 - 44074385
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    ||||||||||||||||| | | |||||||  ||||||||||||||| ||||||| ||| ||||| | ||||||||||||||| |||||||| ||||||||    
T  44074279 cagttaactgtcggcgcatggcctaacggcagttaactgccgctgggggtaaaagcgtcatttatttgtgtcaataggaagtatcctatgttagaaaagc 44074378  T
Q  161 aattttc 167  Q
    |||||||    
T  44074379 aattttc 44074385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 6978754 - 6978859
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| |||||| ||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| | | |  ||||| ||||||||    
T  6978754 gttaactgccggcgcatagcctaacggttgttaactgccgctgggggtaaaaacgttatttacttgtgtcaataggaaatattcattgtcaaaaaagcaa 6978853  T
Q  163 ttttct 168  Q
    ||||||    
T  6978854 ttttct 6978859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 24108408 - 24108517
Alignment:
Q  58 cgacagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaa 157  Q
    |||||||||||||||| ||||| | ||||| |||||||| |  |||||| ||||||||| | ||||||| ||||||||||||||| | ||||||||||||    
T  24108408 cgacagttaactgtcgacgcttggcctaacagttgttaattatcgctgggggtaaaaacatcatttacttgtgtcaataggaagtattctatgtcagaaa 24108507  T
Q  158 agcaattttc 167  Q
    | ||||||||    
T  24108508 aacaattttc 24108517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 6976066 - 6975962
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||| | ||| |||||| || ||||||| || ||| ||||||||||| ||||||| ||||||||||||||| | |||| ||||||||||||    
T  6976066 gttaactgtcggcacatagcctaacgattcttaactgtcgttgggggtaaaaacgtcatttacttgtgtcaataggaagtattctatatcagaaaagcaa 6975967  T
Q  163 ttttc 167  Q
    |||||    
T  6975966 ttttc 6975962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 23719414 - 23719308
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    |||||||||| |||||  ||| |||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||| | |  ||||| |||||     
T  23719414 cagttaactgccggcgtatagcctaacggttgttaactgccgctggagataaaagcgtcatttacttgtgtcaataggaagtattcattgtcaaaaaagg 23719315  T
Q  161 aattttc 167  Q
    |||||||    
T  23719314 aattttc 23719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 24107086 - 24106980
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    |||||||||| |||||  ||| |||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||| | |  ||||| |||||     
T  24107086 cagttaactgccggcgtatagcctaacggttgttaactgccgctggagataaaagcgtcatttacttgtgtcaataggaagtattcattgtcaaaaaagg 24106987  T
Q  161 aattttc 167  Q
    |||||||    
T  24106986 aattttc 24106980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 4425093 - 4425017
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttcta 169  Q
    ||||||||| ||||| ||||||| ||| ||||||| ||||||||||||||| | ||||||||||||| ||||||||||    
T  4425093 gttaactgcagctgg-ggtaaaagcgtcatttacttgtgtcaataggaagtattctatgtcagaaaatcaattttcta 4425017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 44037854 - 44037946
Alignment:
Q  74 gcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||  ||||||||||||||||| | ||| ||||||||||| ||||| |  |||||||||||||| | ||||||||||||| ||||||||    
T  44037854 gcgcttaggttaacggttgttaactgctgttgg-ggtaaaaacgtcatttatttatgtcaataggaagtattctatgtcagaaaaacaattttc 44037946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 27131346 - 27131421
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||  ||||||||||||||| | ||||||| |||||||||| |||| |  |||||||||||||||||||||    
T  27131346 gttaactgttgctggaggtaaaaacatcatttacttgtgtcaatagaaagtattttatgtcagaaaagcaattttc 27131421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 31297687 - 31297640
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  31297687 atttacttgtgtcaataggaagtattctatgtcagaaaagcaattttc 31297640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 31500862 - 31500778
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttcta 169  Q
    ||||||||||||||||||||| ||| |     ||| |||||| ||||||||| ||||||| |  |||||||||||||||||||||    
T  31500862 aacggttgttaactgccgctgaaggcattttagtattttacttgtgtcaatatgaagttttcattgtcagaaaagcaattttcta 31500778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 34522715 - 34522767
Alignment:
Q  117 gtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttcta 169  Q
    |||| ||||| ||||||||||||||| | ||||||||||||| ||||||||||    
T  34522715 gtaaattacttgtgtcaataggaagtattctatgtcagaaaatcaattttcta 34522767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 31298850 - 31298897
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||| ||||||||||||||||| |||| ||| |||||||||||||    
T  31298850 atttacttgtgtcaataggaagttttctatatcaaaaaagcaattttc 31298897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 10361126 - 10361231
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||| | | | |||||||   ||||||| || ||| ||||||| ||| |||||||  |||||||||||||| |  |||||||||||| |||    
T  10361126 gttaactgtcggcacattgtctaacggcaattaactgtcgttgg-ggtaaaagcgtcatttacttatgtcaataggaagtattttatgtcagaaaaacaa 10361224  T
Q  163 ttttcta 169  Q
    |||||||    
T  10361225 ttttcta 10361231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 5422253 - 5422357
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||| ||||||| | | |||||||  ||| ||||||| ||| ||||||| ||| ||||||| |||||||||| |||| | |  ||||| ||||||||    
T  5422253 gttaactatcggcgcattgcctaacggcagtttactgccgttgg-ggtaaaagcgtcatttacttgtgtcaatagaaagtattcgctgtcaaaaaagcaa 5422351  T
Q  163 ttttct 168  Q
    ||||||    
T  5422352 ttttct 5422357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 3259919 - 3259875
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaatt 164  Q
    ||||||| |||||||||| |||| | |||||||||||||||||||    
T  3259919 atttacttgtgtcaatagaaagtattctatgtcagaaaagcaatt 3259875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 37313290 - 37313322
Alignment:
Q  38 tgaatatatcacgaacaccacgacagttaactg 70  Q
    |||||||||||||||||| ||||||||||||||    
T  37313290 tgaatatatcacgaacacaacgacagttaactg 37313322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 2206246 - 2206352
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| |||| | ||| |||||||  ||||||||||||||  ||||||||| | ||||||| ||||||||||||||| | |||||||||||||||||    
T  2206246 gttaactgccggcccatagcctaacggcagttaactgccgctgagggtaaaaacatcatttacttgtgtcaataggaagtattctatgtcagaaaagcaa 2206345  T
Q  163 ttttcta 169  Q
    |||||||    
T  2206346 ttttcta 2206352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 47943346 - 47943282
Alignment:
Q  73 ggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaatag 137  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  47943346 ggcgcttagactaacagttgttaactgccgctcgaggtaaaaacgtcatttacttgtgtcaatag 47943282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 47948776 - 47948712
Alignment:
Q  73 ggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaatag 137  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  47948776 ggcgcttagactaacagttgttaactgccgctcgaggtaaaaacgtcatttacttgtgtcaatag 47948712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 1299044 - 1299150
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||||||||||||   | |||||| ||||||| |||||||||| ||  |  ||  ||| | |||||||||||||||||||||||||| ||||||||    
T  1299044 gttaactgtcggcgcttcttccaacggtagttaactaccgctggaggcaattatatacattatttgtgtcaataggaagtttcctatgtcaaaaaagcaa 1299143  T
Q  163 ttttcta 169  Q
    |||||||    
T  1299144 ttttcta 1299150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 2204122 - 2204014
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||||||| | | |||||||  |||||| |||||| | | |||||  || ||||||| ||||||||||||||| | |  ||||| ||||||||    
T  2204122 gttaactgtcggcgcattgcctaacggcagttaaccgccgcttgggataaaagtgtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaa 2204023  T
Q  163 ttttctaat 171  Q
    |||||||||    
T  2204022 ttttctaat 2204014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 47863831 - 47863780
Alignment:
Q  117 gtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||| ||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  47863831 gtaaattacttgtgtcaataggaagcttcctatgtcaaaaaagcaattttct 47863780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 1295994 - 1295943
Alignment:
Q  117 gtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttcta 169  Q
    |||| ||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  1295994 gtaaattacttgtgtcaataggaagtttcctatgtca-aaaagaaattttcta 1295943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 4997152 - 4997232
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaata 172  Q
    ||||||| |||| |||||||||||||| |||| |  ||||||||| |||||||   |||||| ||||||||||||| ||||    
T  4997152 gttaactaccgccggaggtaaaaacgtcatttccatgtgtcaatatgaagttttgaatgtcaaaaaagcaattttcaaata 4997232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 20708311 - 20708207
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||| |||||||||||| | ||| |||||||||  ||||||| || |     ||| |||||| |||||| |  |||||||||||||||||||||||||    
T  20708311 gttaacagtcggcgcttagcccaacagttgttaacaaccgctgggggcattttagtattttacttgtgtcattgtgaagtttcctatgtcagaaaagcaa 20708212  T
Q  163 ttttc 167  Q
    |||||    
T  20708211 ttttc 20708207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 20876355 - 20876251
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||| |||||||||||| | ||| |||||||||  ||||||| || |     ||| |||||| |||||| |  |||||||||||||||||||||||||    
T  20876355 gttaacagtcggcgcttagcccaacagttgttaacaaccgctgggggcattttagtattttacttgtgtcattgtgaagtttcctatgtcagaaaagcaa 20876256  T
Q  163 ttttc 167  Q
    |||||    
T  20876255 ttttc 20876251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 10555046 - 10555152
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    ||||||||||||||||| | | |||||||||||||||||||| ||| |  |   | ||| |||||| ||||||||  ||| ||  | |||||||||||||    
T  10555046 cagttaactgtcggcgcatggcctaacggttgttaactgccgttggggacatttaggtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagc 10555145  T
Q  161 aattttc 167  Q
    |||||||    
T  10555146 aattttc 10555152  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 17185122 - 17185207
Alignment:
Q  83 ctaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||||  ||||||||||||||  | ||||| ||| ||||||| ||||||||||||||| | |  ||||  ||||||||||||||    
T  17185122 ctaacggcagttaactgccgctgtggataaaagcgtcatttacttgtgtcaataggaagtattcattgtcgaaaaagcaattttct 17185207  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 45414338 - 45414282
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagt 142  Q
    |||||||||||||| ||||||| ||||||||||| ||||||| |||| ||||| ||||    
T  45414338 aacggttgttaactaccgctgg-ggtaaaaacgtcatttacttgtgttaatagaaagt 45414282  T

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Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 22868378 - 22868480
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| |||||||||| |||||||||||||||||||||| | || ||  | |||| ||||| ||||||||||||||||| |||||||| ||||||||    
T  22868378 gttaactgccggcgcttaggctaacggttgttaactgccgctaggggaaattatgtaaattacttgtgtcaataggaagttttctatgtcaaaaaagcaa 22868477  T
Q  163 ttt 165  Q
    |||    
T  22868478 ttt 22868480  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 12398717 - 12398820
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    |||||||| |||||| | | |||||||  ||||||||||||||| | ||||| ||| ||||||| ||||||||||||||| | ||||| |||||||||||    
T  12398717 gttaactgccggcgcattgcctaacggcagttaactgccgctggggataaaagcgtcatttacttgtgtcaataggaagtattctatgacagaaaagcaa 12398816  T
Q  163 tttt 166  Q
    ||||    
T  12398817 tttt 12398820  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 5620753 - 5620836
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||||||||||||||||||| || |   ||||| |||||| ||||||||||||||||| |  |||||||||| |||||||||    
T  5620753 aacggttgttaactgccgctgggggcatttacgtagtttacttgtgtcaataggaagttttcattgtcagaaaaacaattttct 5620836  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 31860708 - 31860789
Alignment:
Q  87 cggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||||||||||||||||| || ||  | || ||||||| |||||| |  ||||||| |||||||||||||||||||||||    
T  31860708 cggttgttaactgccgctgggggcaattatgtcatttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 31860789  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 29268380 - 29268462
Alignment:
Q  85 aacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||||||||||||||||||||| | ||||||| ||| || | |||  || ||| ||| |||||||| |||||||||||||    
T  29268380 aacggttgttaactgccgctggaggcataaacgtatttttcttgcgtcgttatgaacttttctatgtcaaaaaagcaattttc 29268462  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 5613901 - 5613794
Alignment:
Q  61 cagttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagc 160  Q
    |||||||||| ||||| || |  ||| ||| ||||||| ||||||| ||||   | ||| |||||| | ||||||||||| |||||| ||||| ||||||    
T  5613901 cagttaactgccggcggtttggataatggtagttaactaccgctgggggtatttaagtattttacttgggtcaataggaactttcctttgtcaaaaaagc 5613802  T
Q  161 aattttct 168  Q
    ||||||||    
T  5613801 aattttct 5613794  T

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Target: scaffold0589 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 1470 - 1385
Alignment:
Q  83 ctaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    |||||||  ||||||||||||||||||||||| ||| ||||| |  ||| |||||||||| | |||||||||||||||| ||||||    
T  1470 ctaacggcagttaactgccgctggaggtaaaagcgtcatttatttatgtaaataggaagtattctatgtcagaaaagcacttttct 1385  T

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Target: scaffold0589; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 1542 - 1510
Alignment:
Q  38 tgaatatatcacgaacaccacgacagttaactg 70  Q
    |||||||||||||||||| ||||||||||||||    
T  1542 tgaatatatcacgaacacaacgacagttaactg 1510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 5547 - 5627
Alignment:
Q  92 gttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttctaata 172  Q
    ||||||||||||||| ||||||| ||  ||||||| ||||||||| ||||| | |  ||| | |||| |||||||||||||    
T  5547 gttaactgccgctgggggtaaaagcgccatttacttgtgtcaataagaagtattcattgtaaaaaaaacaattttctaata 5627  T

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Target: scaffold0769 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 751 - 803
Alignment:
Q  117 gtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttcta 169  Q
    |||| ||||| ||||||||||||||| | ||||||||||||| ||||||||||    
T  751 gtaaattacttgtgtcaataggaagtattctatgtcagaaaatcaattttcta 803  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 130565 - 130612
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttc 167  Q
    ||||||| ||||||||||||||| | |||||||| |||||||||||||    
T  130565 atttacttgtgtcaataggaagtattctatgtcaaaaaagcaattttc 130612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 127251 - 127203
Alignment:
Q  120 atttactcgtgtcaataggaagtttcctatgtcagaaaagcaattttct 168  Q
    ||||||| ||||| ||||||||| | || ||||||||||||||||||||    
T  127251 atttacttgtgtcgataggaagtattctttgtcagaaaagcaattttct 127203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 2917 - 2813
Alignment:
Q  63 gttaactgtcggcgcttagactaacggttgttaactgccgctggaggtaaaaacgtaatttactcgtgtcaataggaagtttcctatgtcagaaaagcaa 162  Q
    ||||||||||| || ||  || |||||| ||||||| ||||||  || |  |||||| ||||||  |||| ||| ||||||| |||||||| ||||||||    
T  2917 gttaactgtcgccggttctaccaacggtagttaactaccgctgtgggcattaacgtattttacttatgtctatatgaagttttctatgtcaaaaaagcaa 2818  T
Q  163 ttttc 167  Q
    |||||    
T  2817 ttttc 2813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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