View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_395 (Length: 220)

Name: NF10049A_low_395
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_395
NF10049A_low_395
[»] chr7 (8 HSPs)
chr7 (11-207)||(26617737-26617933)
chr7 (16-156)||(39865471-39865611)
chr7 (16-207)||(33190303-33190494)
chr7 (80-207)||(14719370-14719501)
chr7 (56-207)||(7578536-7578687)
chr7 (24-105)||(14719287-14719367)
chr7 (43-104)||(37479556-37479617)
chr7 (89-207)||(35339023-35339141)
[»] chr4 (16 HSPs)
chr4 (23-207)||(52311220-52311404)
chr4 (16-183)||(54687660-54687826)
chr4 (32-177)||(20275938-20276082)
chr4 (47-207)||(5350929-5351089)
chr4 (16-177)||(26997226-26997387)
chr4 (16-183)||(54678540-54678709)
chr4 (19-204)||(17365674-17365858)
chr4 (16-177)||(26992029-26992193)
chr4 (16-107)||(6408036-6408126)
chr4 (20-106)||(22746635-22746721)
chr4 (45-207)||(27360193-27360354)
chr4 (16-207)||(12746524-12746715)
chr4 (16-69)||(14000179-14000230)
chr4 (82-204)||(18902113-18902234)
chr4 (18-69)||(13994875-13994924)
chr4 (81-137)||(20355099-20355155)
[»] chr5 (8 HSPs)
chr5 (16-207)||(16633256-16633446)
chr5 (16-177)||(19779955-19780116)
chr5 (23-177)||(19479453-19479607)
chr5 (80-207)||(17604690-17604821)
chr5 (16-177)||(19783203-19783363)
chr5 (43-105)||(17604824-17604886)
chr5 (164-207)||(21575046-21575089)
chr5 (115-207)||(35105030-35105122)
[»] chr1 (6 HSPs)
chr1 (11-184)||(40274356-40274530)
chr1 (16-177)||(40279150-40279311)
chr1 (16-186)||(29530120-29530291)
chr1 (22-186)||(29547775-29547940)
chr1 (43-206)||(28201654-28201817)
chr1 (56-138)||(27417427-27417509)
[»] chr3 (7 HSPs)
chr3 (15-129)||(8832532-8832646)
chr3 (16-141)||(39875817-39875940)
chr3 (16-128)||(44126711-44126823)
chr3 (85-207)||(21587185-21587306)
chr3 (16-67)||(13921708-13921757)
chr3 (91-207)||(20458819-20458933)
chr3 (134-207)||(20463226-20463299)
[»] chr2 (3 HSPs)
chr2 (43-207)||(19912279-19912443)
chr2 (130-207)||(34111054-34111131)
chr2 (81-203)||(45276354-45276475)
[»] chr8 (6 HSPs)
chr8 (20-106)||(17909890-17909977)
chr8 (28-74)||(10739137-10739183)
chr8 (20-74)||(15007178-15007231)
chr8 (16-70)||(36911929-36911983)
chr8 (26-107)||(10734068-10734149)
chr8 (30-154)||(12145639-12145764)
[»] chr6 (1 HSPs)
chr6 (16-67)||(23599935-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (16-69)||(16258-16311)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 26617737 - 26617933
Alignment:
Q  11 atcagagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagat 110  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||||    
T  26617737 atcaaagaagaggaagaagaagatgaaaacactttgtattattctcttcacaagtgtgtctttacaattcaatatgagccctatttataggattcaagat 26617836  T
Q  111 gaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617837 gaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 26617933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 39865611 - 39865471
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||  ||| | ||||||| ||||||||||| ||||||||||| ||    
T  39865611 agaagaggaaggagaagatgaaagcactttgtattattctcttcaagagtgtgtctttgcaatacgatatgagccctatttatagtacacaagatgagta 39865512  T
Q  116 agtgagtgatcaagataattaaggtccactaactattcact 156  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  39865511 agtgagtgatcaagacaattaaggtccactaactattcact 39865471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 33190303 - 33190494
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||| |||||  ||||||||||| ||    
T  33190303 agaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatatgagaccta-ttataatacacaagatgagta 33190401  T
Q  116 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagac-taaggatggaaatccactaa 207  Q
    ||||||||||||||  || ||||||||| |||||||||||| |  |||||   ||||||||| ||||||||| |||||||| | |||||||||    
T  33190402 agtgagtgatcaaggcaactaaggtccagtaactattcacttaccaatggaaattataggaaggtgaaagacttaaggatgtacatccactaa 33190494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 207
Target Start/End: Original strand, 14719370 - 14719501
Alignment:
Q  80 caatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaac----tattcactcattaatgggggttatagg 175  Q
    |||||||||||||||||||| || |||| |||||||  ||||||||||| |||||||||||||||||||    |||||||||| ||||||||||||||||    
T  14719370 caatatgagtcctatttataagatacaaaatgaatagctgagtgatcaaaataattaaggtccactaactatatattcactcactaatgggggttatagg 14719469  T
Q  176 aaagtgaaagactaaggatggaaatccactaa 207  Q
    || ||| ||||||||||| ||| |||||||||    
T  14719470 aaggtggaagactaaggacggacatccactaa 14719501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 7578687 - 7578536
Alignment:
Q  56 cttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcac 155  Q
    |||| |||||||||||||| | |  |||||||||||||||||||||| |||| || |  |||||| |||||||  ||||||||| ||||| || || ||     
T  7578687 cttctcaagtgtgtctttatactataatatgagtcctatttataggatacaatataagcaagtgaatgatcaaagtaattaaggaccactgaccatccat 7578588  T
Q  156 tcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    ||| | |||||  |||| |||| ||| ||||||||||||||| |||||||||    
T  7578587 tcacttatgggacttatgggaaggtggaagactaaggatggacatccactaa 7578536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 14719287 - 14719367
Alignment:
Q  24 aagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacac 105  Q
    |||||||||||||||||  ||||||||||||||||||||||||||  |||| | | ||||||||| ||||||||||||||||    
T  14719287 aagaagaagatgaaagct-tttgtattattctcttcacaagtgtgcatttacactacaatatgagccctatttataggacac 14719367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 37479556 - 37479617
Alignment:
Q  43 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggaca 104  Q
    ||||||||||||||||||||| ||| |||||| | | ||||||  |||||||||||||||||    
T  37479556 tttgtattattctcttcacaaatgtttctttacattgcaatataggtcctatttataggaca 37479617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 35339023 - 35339141
Alignment:
Q  89 tcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagact 188  Q
    |||||||||||||| |||| ||||  | ||||   |||||  ||||||||| ||| |||| || || ||| | ||||| |||||||||| ||| ||||||    
T  35339023 tcctatttataggatacaatatgagcatgtgaaatatcaaagtaattaaggaccattaaccatccattcacttatgggagttataggaaggtggaagact 35339122  T
Q  189 aaggatggaaatccactaa 207  Q
    || |||||| |||||||||    
T  35339123 aatgatggacatccactaa 35339141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 52311220 - 52311404
Alignment:
Q  23 gaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagt 122  Q
    |||||||| ||||||| || ||||||||||||||||||||| |||||||||| | | |||||||| |||||||||||||||||||||||| |||||||||    
T  52311220 gaagaagatgatgaaaacattttgtattattctcttcacaaatgtgtctttacactgcaatatgaatcctatttataggacacaagatgactaagtgagt 52311319  T
Q  123 gatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    ||||||   |||||||||||||||||||||||||||  ||| ||||||||||||| ||| ||||||| ||||||| || ||||||    
T  52311320 gatcaaagaaattaaggtccactaactattcactcaccaataggggttataggaaggtggaagactagggatggacattcactaa 52311404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 54687660 - 54687826
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 115  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||  ||||||||||| | ||||||||| ||    
T  54687660 agaagaggaaggagaagatgaaatcactttgtattattctcttcacaagtgtatctttataatacaatatgaaccctatttatagtatacaagatgagta 54687759  T
Q  116 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaa 183  Q
    ||| ||||||||||| |||| |||||| |||| |||||||| | |||| |||||||||||||||||||    
T  54687760 agtaagtgatcaagaaaattgaggtcccctaattattcacttactaat-ggggttataggaaagtgaa 54687826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 20276082 - 20275938
Alignment:
Q  32 gatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagat 131  Q
    ||||||||| |||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||      
T  20276082 gatgaaagc-ctttgtattattctgttcacatgtgtgtctttacaatacaatatgagtcctatttatagtacataagatgagtaagtgagtgatcaaggc 20275984  T
Q  132 aattaaggtccactaactattcactcattaatgggggttataggaa 177  Q
    | ||||||||||||||||||||||| | ||||||  ||||||||||    
T  20275983 agttaaggtccactaactattcacttactaatggaagttataggaa 20275938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 5351089 - 5350929
Alignment:
Q  47 tattattctcttcacaagtgtgtctttag-aattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccact 145  Q
    ||||||||| |||||||||||||||||   |||  ||||||||||||||||||||||||||| |||| |||||| | |||||| ||||||||||||| ||    
T  5351089 tattattctattcacaagtgtgtctttttcaataaaatatgagtcctatttataggacacaaaatgagtaagtg-gcgatcaaaataattaaggtccgct 5350991  T
Q  146 aactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    ||||||||||||  |||||| | ||||||||| ||| ||||||||||||||| |||||||||    
T  5350990 aactattcactcgctaatggagattataggaaggtggaagactaaggatggacatccactaa 5350929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 26997387 - 26997226
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 115  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||  |||  |||||||||||||||||||| ||||||||||| ||    
T  26997387 agaagagaaaggagaagatgaaagcactttgtattattctcttcacaagtatgtctttgcaatataatatgagtcctatttatagtacacaagatgagta 26997288  T
Q  116 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 177  Q
    ||| |||| ||||    |||||||| |||| |||||||||| | ||||| | ||||||||||    
T  26997287 agttagtgttcaaagctattaaggttcactgactattcacttactaatgagagttataggaa 26997226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 54678540 - 54678709
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 115  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||||  || |||||| |||  |||||||||||||||||||  ||||||||||| ||    
T  54678540 agaagaggaaggagaagatgaaaacactttttattattctcttcacaaacgtatctttacaatataatatgagtcctatttataatacacaagatgagta 54678639  T
Q  116 agt--gagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaa 183  Q
    |||  | ||||||||   ||||||||||||| ||||||||||| | ||| |||||||||||||| |||||    
T  54678640 agtaagtgtgatcaatgaaattaaggtccaccaactattcacttaataacgggggttataggaaggtgaa 54678709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 17365858 - 17365674
Alignment:
Q  19 agaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagt 118  Q
    |||||||||||| | ||||| || ||||||||||| | |||||||  || |||||| | |  |||| ||| | ||||||||||||||||||||| |||||    
T  17365858 agaggaagaagatggtgaaaacattttgtattattttgttcacaaaggtttctttacactataata-gagccttatttataggacacaagatgagtaagt 17365760  T
Q  119 gagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccac 204  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||  ||||||| |||| || ||||||||||||| | ||||||    
T  17365759 gagtgatcaaagaaattaaggtccactaactattcactcactaatgaaggttataagaaaatggaagactaaggatgaacatccac 17365674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 26992193 - 26992029
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattatt---ctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatga 112  Q
    ||||||||||  |||||||||||| |||||||||||||   |||||||||||| | |||||  |||  |||||||| ||||||||||| ||||  |||||    
T  26992193 agaagaggaaagagaagatgaaagtactttgtattattattctcttcacaagtatatctttgcaatataatatgagccctatttatagtacacgggatga 26992094  T
Q  113 ataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 177  Q
    |||||| ||||||||||  ||||||||||||||||||||||||| | ||||| |  |||||||||    
T  26992093 ataagttagtgatcaaggcaattaaggtccactaactattcacttactaatgagatttataggaa 26992029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 6408126 - 6408036
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaa 107  Q
    |||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||   | ||||||  ||||||||||||||||||||    
T  6408126 agaagaagaagaagaagatgaaag-attttgtattattctcttcacaagtgtgcctttactttgcaatataggtcctatttataggacacaa 6408036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 22746721 - 22746635
Alignment:
Q  20 gaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacaca 106  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||| | |  ||| |  |||||||||||||||||||    
T  22746721 gaggaggaagaagatgaaagtactttgtattattctcttcacaagggtgtcattacattgtaatgtaggtcctatttataggacaca 22746635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 27360354 - 27360193
Alignment:
Q  45 tgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccac 144  Q
    ||||||||| | |||||||| ||||||||| | |  ||||  |||||||||||||||| |||| ||||| |||||| |||||||  ||||||||| ||||    
T  27360354 tgtattatttttttcacaagcgtgtctttacactataatacaagtcctatttataggatacaatatgaacaagtgaatgatcaaagtaattaaggaccac 27360255  T
Q  145 taactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    |||| ||  | ||||| || || |||||||||| ||| |||||||  |||| | |||||||||    
T  27360254 taaccatctattcatttat-ggagttataggaaggtggaagactactgatgaacatccactaa 27360193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 12746524 - 12746715
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc-tttagaattcaatatgagtcctatttataggacacaagatgaat 114  Q
    ||||||||| |||||||||||||| |  |||||||||||| |||| ||||||||| || | | |  |||||  || ||||||||||||| ||| ||||      
T  12746524 agaagaggaggaagaagatgaaagtatattgtattattcttttcataagtgtgtcattcacattataatataggttctatttataggacgcaa-atgagc 12746622  T
Q  115 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    |||||| |||||||  | ||||||| ||| ||| ||| || ||| |||| | ||||||||||| ||| |||| | |||||||| |||||||||    
T  12746623 aagtgaatgatcaaagtcattaaggaccattaagtatacattcactaatagtggttataggaaggtggaagattgaggatggacatccactaa 12746715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 14000230 - 14000179
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 69  Q
    ||||||||||||||| |||||||||  ||||| |||||||||||||||||||||    
T  14000230 agaagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgtgt 14000179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 18902113 - 18902234
Alignment:
Q  82 atatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtg 181  Q
    |||||||||  ||||||||||||||| ||||  ||||||  |||||| | |||||||| ||| |||  || || ||| |||||| ||||||||||| |||    
T  18902113 atatgagtcagatttataggacacaa-atgagcaagtgaaagatcaaaacaattaaggaccattaagcatccattcactaatggaggttataggaaggtg 18902211  T
Q  182 aaagactaaggatggaaatccac 204  Q
    ||||| |||||||| | ||||||    
T  18902212 aaagattaaggatgaacatccac 18902234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 13994924 - 13994875
Alignment:
Q  18 aagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 69  Q
    ||||||||||||| |||||||||  ||||| |||||||||||||||||||||    
T  13994924 aagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgtgt 13994875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 20355099 - 20355155
Alignment:
Q  81 aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaa 137  Q
    |||||||||||||||||||||| |||| ||||| || ||| |||||||  |||||||    
T  20355099 aatatgagtcctatttataggatacaatatgaacaactgaatgatcaaagtaattaa 20355155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 16633256 - 16633446
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 115  Q
    |||||| ||||| || ||||||| |  ||| |||||||||||||||||| ||||||||  ||| ||||||||| ||||||||||||||||||| ||| ||    
T  16633256 agaagaagaagatgatgatgaaaaccttttatattattctcttcacaagcgtgtctttgcaatacaatatgagccctatttataggacacaagttgagta 16633355  T
Q  116 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    ||||| |||||||  |||||||||||||||||||||||||||  |||| ||||||||||||| ||| ||||||||||||||| |||||||||    
T  16633356 agtgaatgatcaaagtaattaaggtccactaactattcactcgctaat-ggggttataggaaggtggaagactaaggatggacatccactaa 16633446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 19779955 - 19780116
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 115  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||  |||||||||||  ||| ||||||||| ||||||||||| |||||||| || ||    
T  19779955 agaagaggaatgagaagataaaagcactttgtattattctcttcaagagtgtgtctttgtaatacaatatgagccctatttatagtacacaagacgagta 19780054  T
Q  116 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 177  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||| | ||||||||||    
T  19780055 agtgagtgatcaaggtaattaaggtccactaactattcacttactaatgagagttataggaa 19780116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 19479453 - 19479607
Alignment:
Q  23 gaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagt 122  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||| |||||| || ||||||||||| ||||||||||| |||| ||||    
T  19479453 gaagaagaagatgaaagaactttgtattattctctttataagtgtgtctttacaatacaatataagccctatttatagtacacaagatgagtaagcgagt 19479552  T
Q  123 gatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 177  Q
    |||||||  ||||||||||||||||||||||||| | ||||| | ||||||||||    
T  19479553 gatcaaggcaattaaggtccactaactattcacttactaatgagagttataggaa 19479607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 17604821 - 17604690
Alignment:
Q  80 caatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaac----tattcactcattaatgggggttatagg 175  Q
    |||||||||||||||||||| || |||| |||||||  ||||||||||| |||||||||||||||||||    |||||||||| ||||||||||||||||    
T  17604821 caatatgagtcctatttataagatacaaaatgaatagctgagtgatcaaaataattaaggtccactaactatatattcactcactaatgggggttatagg 17604722  T
Q  176 aaagtgaaagactaaggatggaaatccactaa 207  Q
    || ||| ||||||||||||||| |||||||||    
T  17604721 aaggtggaagactaaggatggacatccactaa 17604690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 19783203 - 19783363
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 115  Q
    ||||||| ||| ||||||| |||||||||||||||||||||||||  ||||||||||| | || |||||||||  |||||||||| ||||||||||| ||    
T  19783203 agaagagaaaggagaagataaaagcactttgtattattctcttcaagagtgtgtcttt-gcatacaatatgagcactatttatagtacacaagatgagta 19783301  T
Q  116 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 177  Q
    |||||||||| ||   ||||||| ||||||||||||||||| | ||||| | ||||||||||    
T  19783302 agtgagtgatgaaagcaattaagttccactaactattcacttactaatgagagttataggaa 19783363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 17604886 - 17604824
Alignment:
Q  43 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacac 105  Q
    ||||||||||||||||||||||||||  |||| | | ||||||||| ||||||||||||||||    
T  17604886 tttgtattattctcttcacaagtgtgcatttacactacaatatgagccctatttataggacac 17604824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 21575046 - 21575089
Alignment:
Q  164 gggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||    
T  21575046 gggggttataggaaggtggaagactaaggatggacatccactaa 21575089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 35105122 - 35105030
Alignment:
Q  115 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    |||||| |||||||  |||||||||  ||||||| || || ||| | ||||| ||||| | || ||| ||||||||||||||| |||||||||    
T  35105122 aagtgaatgatcaaagtaattaaggatcactaaccatccattcacttatgggagttattgcaaggtgtaagactaaggatggacatccactaa 35105030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 40274356 - 40274530
Alignment:
Q  11 atcagagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagat 110  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| || ||||||||||  |||||||||    
T  40274356 atcaaagaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatattagccctatttataatacacaagat 40274455  T
Q  111 gaataagtgagtgatcaagataattaaggtccactaacta-ttcactcattaatgggggttataggaaagtgaaa 184  Q
    || ||||||||||||||||  |||||| |||||||||||| |||||| | ||||||| |||||| ||| ||||||    
T  40274456 gagtaagtgagtgatcaaggcaattaaagtccactaactatttcacttactaatgggagttataagaaggtgaaa 40274530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 40279150 - 40279311
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 115  Q
    ||||||| ||| ||||||||||| |||||| ||||||||||||||||| |||||||||  ||| ||||||||  ||||||||||| ||||||||||| ||    
T  40279150 agaagagaaaggagaagatgaaaacactttatattattctcttcacaaatgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgagta 40279249  T
Q  116 agtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 177  Q
    ||||||||||||||  ||||||||||||||||||||||||| | ||||||| ||||||||||    
T  40279250 agtgagtgatcaaggcaattaaggtccactaactattcacttactaatgggagttataggaa 40279311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 29530291 - 29530120
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattct-cttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacacaagatgaa 113  Q
    |||||||||||||| |||||||| ||||||||||||||||  ||  |||||||| |||||| | | ||||||  |||||||||||| ||||||| ||||     
T  29530291 agaagaggaagaaggagatgaaaacactttgtattattctatttttcaagtgtgttctttacattacaatataggtcctatttatatgacacaa-atgag 29530193  T
Q  114 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaaga 186  Q
     |||||| |||||||   |||||||| |||||||| || || | | | |||||| ||| ||||||||| ||||    
T  29530192 caagtgaatgatcaaaccaattaaggaccactaaccatgcatttactgatggggtttacaggaaagtggaaga 29530120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 29547940 - 29547775
Alignment:
Q  22 ggaagaagaagatgaaagcactttgtattattctc-ttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacacaagatgaataagtg 119  Q
    |||||||||||||||||  | |||||||||||||| ||  |||||||| |||||| | | ||||||  ||||||||||||||||| || ||||  |||||    
T  29547940 ggaagaagaagatgaaaatattttgtattattctctttttcaagtgtgttctttacattacaatataggtcctatttataggacataa-atgagcaagtg 29547842  T
Q  120 agtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaaga 186  Q
    | |||||||   |||||||| |||||||| || || | | |||||||| ||||||||| ||| ||||    
T  29547841 aatgatcaaacaaattaaggaccactaaccatgcatttactaatggggattataggaaggtggaaga 29547775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 28201654 - 28201817
Alignment:
Q  43 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtcc 142  Q
    |||||| ||||||||| |||||||||   ||| | |  |||||||||| ||||||||||||| || ||||| |||||| | |||||   |||||| | |     
T  28201654 tttgtactattctctttacaagtgtgctattacattaaaatatgagtcatatttataggacataa-atgaacaagtgaattatcaaagcaattaaagact 28201752  T
Q  143 actaactattcactcattaatgg-gggttataggaaagtgaaagactaaggatggaaatccacta 206  Q
    |||||| || || ||| |||||| |||||||||||| ||| ||||  ||||||||| ||||||||    
T  28201753 actaaccatacattcactaatggagggttataggaaggtggaagataaaggatggacatccacta 28201817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 27417427 - 27417509
Alignment:
Q  56 cttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaag 138  Q
    |||| |||||||||||||| | |  |||| |||||||||||||| || |||| |||| ||||||| |||||||  ||||||||    
T  27417427 cttctcaagtgtgtctttacattataatacgagtcctatttataagatacaatatgagtaagtgaatgatcaaattaattaag 27417509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 8832532 - 8832646
Alignment:
Q  15 gagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 114  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||||  | |||||||||  ||| ||||||||  ||||||||||| ||||||||||| |    
T  8832532 gagaagaggaaggagaggatgaaatcactttgtattattctcttcaagactgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgagt 8832631  T
Q  115 aagtgagtgatcaag 129  Q
    |||||||||||||||    
T  8832632 aagtgagtgatcaag 8832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 39875940 - 39875817
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 115  Q
    |||| |||| |||||||||||||| | ||||||||  |||||||||||||||||||||  ||| ||||| |||   ||||||||| ||||||||||| ||    
T  39875940 agaaaaggaggaagaagatgaaagtaatttgtatt--tctcttcacaagtgtgtctttgcaatacaataggagctttatttatagtacacaagatgagta 39875843  T
Q  116 agtgagtgatcaagataattaaggtc 141  Q
    ||||||||||||||  ||||||||||    
T  39875842 agtgagtgatcaaggcaattaaggtc 39875817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 44126711 - 44126823
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc-tttagaattcaatatgagtcctatttataggacacaagatgaat 114  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || | | | ||||||  |||||||||||||||||||| ||||      
T  44126711 agaagagaaagaagaagatgaaagtactttgtattattctcttcacaagtgtgtcattcacattacaatataggtcctatttataggacacaa-atgagc 44126809  T
Q  115 aagtgagtgatcaa 128  Q
    |||||| |||||||    
T  44126810 aagtgaatgatcaa 44126823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 21587185 - 21587306
Alignment:
Q  85 tgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaa 184  Q
    ||||||||||||||||||||||| ||||  |||||| |||||||   | ||||||  ||||||| || |  ||| |||||||||||||||||| ||| ||    
T  21587185 tgagtcctatttataggacacaa-atgagcaagtgaatgatcaaagcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaa 21587283  T
Q  185 gactaaggatggaaatccactaa 207  Q
    || ||||| |||| | |||||||    
T  21587284 gattaagggtggacacccactaa 21587306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 13921757 - 13921708
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgt 67  Q
    ||||||||||||||| |||||||||  ||||| |||||||||||||||||||    
T  13921757 agaagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgt 13921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 20458819 - 20458933
Alignment:
Q  91 ctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaa 190  Q
    ||||||||||| ||||| ||||  |||||| ||||||| | | ||||||| ||||||| |  || ||| |||||||| ||||||||| ||| |||| |||    
T  20458819 ctatttataggtcacaa-atgagcaagtgaatgatcaaaacatttaaggttcactaaccaaacattcactaatgggg-ttataggaaggtggaagattaa 20458916  T
Q  191 ggatggaaatccactaa 207  Q
    ||||||| |||||||||    
T  20458917 ggatggacatccactaa 20458933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 20463226 - 20463299
Alignment:
Q  134 ttaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    ||||||||||||||| || || ||| |||| ||| ||||||||| | | ||||||||| ||||| |||||||||    
T  20463226 ttaaggtccactaaccatacattcactaatagggattataggaaggaggaagactaagaatggacatccactaa 20463299  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 207
Target Start/End: Complemental strand, 19912443 - 19912279
Alignment:
Q  43 tttgtattattctcttcacaagtgtgtctttagaattc-aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtc 141  Q
    ||||||||||||||||||||||||| | |||   |||  |||||  |||||||||||||||||||| ||||  ||||||||||||||   |||||||| |    
T  19912443 tttgtattattctcttcacaagtgtatattttacattataatataggtcctatttataggacacaa-atgagcaagtgagtgatcaaagcaattaaggac 19912345  T
Q  142 cactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
     |||||| || || ||| |||| ||||||||||||| ||| |||| ||||| |||| |||||||||    
T  19912344 tactaaccatacattcaataataggggttataggaaggtggaagattaagggtggacatccactaa 19912279  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 34111054 - 34111131
Alignment:
Q  130 ataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 207  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||| ||| | || |||||||||| |||||||||    
T  34111054 ataattaaggtccactaactattcactcactaatgcgagttataggaaggtggatgattaaggatggacatccactaa 34111131  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 45276475 - 45276354
Alignment:
Q  81 aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagt 180  Q
    ||||||||||||||||||||||||||| |||| ||||||| || |||| |  ||||||| |||||||| || || ||| |||   |||||||||||| ||    
T  45276475 aatatgagtcctatttataggacacaa-atgagtaagtgaatggtcaaaactattaaggaccactaaccatacattcactaacatgggttataggaaggt 45276377  T
Q  181 gaaagactaaggatggaaatcca 203  Q
    | ||||  | ||||||| |||||    
T  45276376 ggaagatgagggatggacatcca 45276354  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 17909977 - 17909890
Alignment:
Q  20 gaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacaca 106  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||| | |   |||| ||||||||||||||||||||    
T  17909977 gaggaaggagaagatgaaagtactttgtattattctcttctcaagtgtgttctttacattgagatataagtcctatttataggacaca 17909890  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 10739183 - 10739137
Alignment:
Q  28 agaagatgaaagcactttgtattattctcttcacaagtgtgtcttta 74  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||    
T  10739183 agaagatgaaagcactttgtattattctcttcacaagtatatcttta 10739137  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 15007231 - 15007178
Alignment:
Q  20 gaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtcttta 74  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  15007231 gaggaaggagaagatgaaagcactttgtatta-tctcttcaccagtgtgtcttta 15007178  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 36911929 - 36911983
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc 70  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||    
T  36911929 agaagaggaagaagaaggtgaaaacactttttattattctcttcagaagtgtgtc 36911983  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 10734149 - 10734068
Alignment:
Q  26 gaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaa 107  Q
    ||||||||||||| |||||||||||||||||||||||||| | |||||| |   |||| |  ||||||||||||||| ||||    
T  10734149 gaagaagatgaaaacactttgtattattctcttcacaagtatatctttacatgacaatgtaggtcctatttataggatacaa 10734068  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 12145639 - 12145764
Alignment:
Q  30 aagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtccta-tttataggacacaagatgaataagtgagtgatcaa 128  Q
    |||||||||||  | |||||||| ||||||| |||||||| |||| | |   | ||||||| || |||||||||||||| ||||  ||||||||||||||    
T  12145639 aagatgaaagctttgtgtattatcctcttcagaagtgtgtttttacactaacaaatgagtcttattttataggacacaaaatgagcaagtgagtgatcaa 12145738  T
Q  129 gataattaaggtccactaactattca 154  Q
      ||||||||  ||||||||||||||    
T  12145739 agtaattaagaaccactaactattca 12145764  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 23599935 - 23599986
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgt 67  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  23599935 agaagatgaagaagaagatgaaagcattttgtattattctcttcataagtgt 23599986  T

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Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 16311 - 16258
Alignment:
Q  16 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 69  Q
    ||||||||||||| || || |||||||||||||||||| |||||||| ||||||    
T  16311 agaagaggaagaaaaatataaaagcactttgtattattttcttcacaggtgtgt 16258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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