View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_400 (Length: 218)

Name: NF10049A_low_400
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_400
NF10049A_low_400
[»] scaffold0016 (1 HSPs)
scaffold0016 (24-215)||(53813-54004)
[»] chr4 (2 HSPs)
chr4 (113-176)||(15707358-15707421)
chr4 (171-215)||(15707440-15707484)
[»] scaffold0642 (2 HSPs)
scaffold0642 (113-176)||(4102-4165)
scaffold0642 (171-215)||(4184-4228)
[»] scaffold0345 (2 HSPs)
scaffold0345 (113-176)||(14014-14077)
scaffold0345 (171-215)||(14096-14140)
[»] scaffold0105 (2 HSPs)
scaffold0105 (113-176)||(24904-24967)
scaffold0105 (171-215)||(24841-24885)
[»] scaffold1526 (2 HSPs)
scaffold1526 (113-168)||(1249-1304)
scaffold1526 (171-215)||(1173-1217)
[»] chr8 (2 HSPs)
chr8 (113-176)||(44495504-44495567)
chr8 (174-215)||(44495589-44495630)
[»] chr2 (2 HSPs)
chr2 (113-168)||(3378229-3378284)
chr2 (171-215)||(3378316-3378360)
[»] chr6 (1 HSPs)
chr6 (28-112)||(21221835-21221922)


Alignment Details
Target: scaffold0016 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 54004 - 53813
Alignment:
Q  24 agtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttactttctc 123  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004 agtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttactttctc 53905  T
Q  124 tctaacatcattccagtccggtccttcttctctcacactctattcatacccatccatgaattcactctagagcggtgagtggcttcgttctt 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53904 tctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactccagagcggtgagtggcttcgttctt 53813  T

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Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 15707358 - 15707421
Alignment:
Q  113 cttactttctctctaacatcattccagtccggtccttcttctctcacactctattcatacccat 176  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15707358 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 15707421  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 15707440 - 15707484
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgttctt 215  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15707440 acccatccatgaattcactccagatcggtgagtggcttcgttctt 15707484  T

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Target: scaffold0642 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 4102 - 4165
Alignment:
Q  113 cttactttctctctaacatcattccagtccggtccttcttctctcacactctattcatacccat 176  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  4102 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 4165  T

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Target: scaffold0642; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 4184 - 4228
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgttctt 215  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4184 acccatccatgaattcactccagatcggtgagtggcttcgttctt 4228  T

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Target: scaffold0345 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 14014 - 14077
Alignment:
Q  113 cttactttctctctaacatcattccagtccggtccttcttctctcacactctattcatacccat 176  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  14014 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 14077  T

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Target: scaffold0345; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 14096 - 14140
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgttctt 215  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14096 acccatccatgaattcactccagatcggtgagtggcttcgttctt 14140  T

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Target: scaffold0105 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 24967 - 24904
Alignment:
Q  113 cttactttctctctaacatcattccagtccggtccttcttctctcacactctattcatacccat 176  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  24967 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 24904  T

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Target: scaffold0105; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 24885 - 24841
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgttctt 215  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  24885 acccatccatgaattcactccagatcggtgagtggcttcgttctt 24841  T

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Target: scaffold1526 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 1304 - 1249
Alignment:
Q  113 cttactttctctctaacatcattccagtccggtccttcttctctcacactctattc 168  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1304 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 1249  T

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Target: scaffold1526; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 1217 - 1173
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgttctt 215  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  1217 acccatccatgaattcactccagatcggtgagtggcttcgttctt 1173  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 44495504 - 44495567
Alignment:
Q  113 cttactttctctctaacatcattccagtccggtccttcttctctcacactctattcatacccat 176  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||    
T  44495504 cttactttctctctaacatcattccaatccggttcttcttctctcacactccattcatacccat 44495567  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 44495589 - 44495630
Alignment:
Q  174 catccatgaattcactctagagcggtgagtggcttcgttctt 215  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  44495589 catccatgaattcactccagatcggtgagtggcttcgttctt 44495630  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 3378229 - 3378284
Alignment:
Q  113 cttactttctctctaacatcattccagtccggtccttcttctctcacactctattc 168  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3378229 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 3378284  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 3378316 - 3378360
Alignment:
Q  171 acccatccatgaattcactctagagcggtgagtggcttcgttctt 215  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3378316 acccatccatgaattcactccagatcggtgagtggcttcgttctt 3378360  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
Q  28 ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata 112  Q
    |||| |||||||||||||||||||||   |||| | || |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  21221835 ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata 21221922  T

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