View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_401 (Length: 218)

Name: NF10049A_low_401
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_401
NF10049A_low_401
[»] chr5 (1 HSPs)
chr5 (33-198)||(35489754-35489919)
[»] chr1 (2 HSPs)
chr1 (41-142)||(14233080-14233181)
chr1 (41-142)||(14242754-14242855)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 33 - 198
Target Start/End: Original strand, 35489754 - 35489919
Alignment:
Q  33 ggacatcaagagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaatgccgcaacatatagacatataaagactaagagaag 132  Q
    |||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35489754 ggacttcaagagagcatatttcactgggaactaaccatcccagcgcaccccaagaccatgcaaatgccgcaacatatagacatataaagactaagagaag 35489853  T
Q  133 atcagcttcggtttttgtaaacgagccttcaccgctaactccaagtttgatagcaatcatacttcc 198  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35489854 atcagcttcagtttttgtaaacgagccttcaccgctaactccaagtttgatagcaatcatacttcc 35489919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 14233181 - 14233080
Alignment:
Q  41 agagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaatgccgcaacatatagacatataaagactaagagaagatcagctt 140  Q
    |||| ||||||||||||||| |||||||| ||||| |  ||||||||||||||||||||||||||||||  ||| |||||||  |||||||| || ||||    
T  14233181 agagcgcatatttcactaggcactaaccaacccaatggtccccaagaccatgcaaatgccgcaacatatgcacaaataaagaacaagagaaggtcggctt 14233082  T
Q  141 cg 142  Q
    ||    
T  14233081 cg 14233080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 14242855 - 14242754
Alignment:
Q  41 agagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaatgccgcaacatatagacatataaagactaagagaagatcagctt 140  Q
    |||| ||||| ||||||||| |||||||| ||||| |  ||||||||||||||||||||||||||||||  ||| |||||||  |||||||| || ||||    
T  14242855 agagcgcatacttcactaggcactaaccaacccaatggtccccaagaccatgcaaatgccgcaacatatgcacaaataaagaacaagagaaggtcggctt 14242756  T
Q  141 cg 142  Q
    ||    
T  14242755 cg 14242754  T

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