View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_405 (Length: 215)
Name: NF10049A_low_405
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_405 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 54261173 - 54261345
Alignment:
| Q |
18 |
aaatagctaatacataagcgcataagttataattgcaaattaagctgtttatccagatagggcgtatatcttgtgttctcagtattcaaagttcaattgt |
117 |
Q |
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| T |
54261173 |
aaatagctaatacataagcgcataagttataattgcaaattaagctgtttatccatatagggcgtatatcttgtgttctcagtattcaaagttcaattgt |
54261272 |
T |
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| Q |
118 |
ttactaatttataagagtaaaggaaattagcaaaagtttgaaagatcaaactcttaattacttgtttcgctct |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54261273 |
ttactaatttataagagtaaaggaaattagcaaaagtttgaaggatcaaactcttaattacttgtttcgctct |
54261345 |
T |
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