View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_406 (Length: 215)
Name: NF10049A_low_406
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_406 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 17167667 - 17167492
Alignment:
| Q |
20 |
aaatgcaatcccagccatctcatcaaattgccccacaccttcctagcaaaatcacaatgcaggaacaaatggttggccaattccaactccccttcacaca |
119 |
Q |
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| T |
17167667 |
aaatgcaatcccagccatctcatcaaattgccccacaccttcctagcaaaatcacaatgcaggaacaaatggttggccaattccaactccccttcacaca |
17167568 |
T |
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| Q |
120 |
tcacacaatctaaagagacatccggtgataacacttgccttagggaaagattagcttttgtcgggagcctattatg |
195 |
Q |
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| T |
17167567 |
tcacacaatctaaagagacatccggtgatagcacttgccttagggaaagattaccttttgtcgggagccttttatg |
17167492 |
T |
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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 20040593 - 20040675
Alignment:
| Q |
51 |
cccacaccttcctagcaaaatcacaatgcaggaacaaatggttggccaattccaactccccttcacacatcacacaatctaaa |
133 |
Q |
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| T |
20040593 |
cccacaccttcatggcaaactcacaatggaggaacaaatggttagccgattccttttccccttcacacatcacacaatctaaa |
20040675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 10509106 - 10509010
Alignment:
| Q |
34 |
ccatctcatcaaattgccccacaccttcctagcaaaatcacaatgcaggaacaaatggttggccaattccaactccccttcacacatcacacaatct |
130 |
Q |
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| T |
10509106 |
ccatctcataacattctcccacaccttcatcgcaaattcacaatggagaaacaagtgattagccgatttcaactcccctaaacacatcacacaatct |
10509010 |
T |
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